getintrons
getintrons extracts intronic sequences from transcript annotations to support genomic and transcriptomic analyses.
Key Features:
- Intronic Sequence Extraction: Identifies and retrieves intron sequences from provided transcript data.
- Galaxy integration: Operates within the Galaxy platform to be used as part of Galaxy workflows.
- Provenance tracking: Leverages Galaxy's automatic tracking of computational steps and histories to support reproducibility.
Scientific Applications:
- Gene expression and alternative splicing analysis: Supplies intronic sequences needed for analyses of gene regulation, expression, and splicing.
- Next-generation sequencing data analyses: Applicable to large datasets generated by next-generation sequencing technologies.
Methodology:
Operates within the Galaxy framework and uses Galaxy's automatic tracking of computational steps and histories to provide reproducible workflows.
Topics
Collections
Details
- Maturity:
- Mature
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 12/19/2016
- Last Updated:
- 11/25/2024
Operations
Data Inputs & Outputs
Publications
Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.
Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.