Glaucoma-TrEl
Glaucoma-TrEl catalogs interactions between trace elements and protein-coding genes implicated in glaucoma to support analysis of their roles in glaucoma pathophysiology.
Key Features:
- Comprehensive gene–trace element interactions: The database contains interaction data for 437 unique genes and eight distinct trace elements associated with glaucoma.
- Pathway association analysis: Genes that interact with trace elements are associated with known glaucoma-related pathways to reveal potential mechanistic links.
- Multi-element interaction mapping: The resource identifies and records genes that interact with multiple trace elements.
- Data compilation and analysis: Curated interaction data were compiled and analyzed to identify significant gene–trace element interactions.
Scientific Applications:
- Mechanistic investigation: Investigation of how trace elements influence gene function and glaucoma-related pathways.
- Target identification: Support for identifying candidate genes and pathways for therapeutic targeting based on element–gene interactions.
- Hypothesis generation: Generation of evidence-based hypotheses linking environmental trace element exposure to genetic factors in glaucoma.
Methodology:
Interaction data for trace elements and protein-coding genes linked to glaucoma were compiled, analyzed to identify significant gene–trace element interactions, and mapped to known glaucoma-related pathways.
Topics
Details
- License:
- CC-BY-4.0
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- R
- Added:
- 1/28/2023
- Last Updated:
- 11/24/2024
Operations
Publications
Choudhari JK, Eberhardt M, Chatterjee T, Hohberger B, Vera J. Glaucoma-TrEl: A web-based interactive database to build evidence-based hypotheses on the role of trace elements in glaucoma. BMC Research Notes. 2022;15(1). doi:10.1186/s13104-022-06210-0. PMID:36401306. PMCID:PMC9673420.
PMID: 36401306
PMCID: PMC9673420
Funding: - Hiege-Stiftung - die Deutsche Hautkrebsstiftung: n/a
- Manfred-Roth-Stiftung: n/a
- Angelika und Helmut Trunk-Stiftung: H2-612-02.104