Glaucoma-TrEl

Glaucoma-TrEl catalogs interactions between trace elements and protein-coding genes implicated in glaucoma to support analysis of their roles in glaucoma pathophysiology.


Key Features:

  • Comprehensive gene–trace element interactions: The database contains interaction data for 437 unique genes and eight distinct trace elements associated with glaucoma.
  • Pathway association analysis: Genes that interact with trace elements are associated with known glaucoma-related pathways to reveal potential mechanistic links.
  • Multi-element interaction mapping: The resource identifies and records genes that interact with multiple trace elements.
  • Data compilation and analysis: Curated interaction data were compiled and analyzed to identify significant gene–trace element interactions.

Scientific Applications:

  • Mechanistic investigation: Investigation of how trace elements influence gene function and glaucoma-related pathways.
  • Target identification: Support for identifying candidate genes and pathways for therapeutic targeting based on element–gene interactions.
  • Hypothesis generation: Generation of evidence-based hypotheses linking environmental trace element exposure to genetic factors in glaucoma.

Methodology:

Interaction data for trace elements and protein-coding genes linked to glaucoma were compiled, analyzed to identify significant gene–trace element interactions, and mapped to known glaucoma-related pathways.

Topics

Details

License:
CC-BY-4.0
Tool Type:
web application
Operating Systems:
Mac, Linux, Windows
Programming Languages:
R
Added:
1/28/2023
Last Updated:
11/24/2024

Operations

Publications

Choudhari JK, Eberhardt M, Chatterjee T, Hohberger B, Vera J. Glaucoma-TrEl: A web-based interactive database to build evidence-based hypotheses on the role of trace elements in glaucoma. BMC Research Notes. 2022;15(1). doi:10.1186/s13104-022-06210-0. PMID:36401306. PMCID:PMC9673420.

PMID: 36401306
PMCID: PMC9673420
Funding: - Hiege-Stiftung - die Deutsche Hautkrebsstiftung: n/a - Manfred-Roth-Stiftung: n/a - Angelika und Helmut Trunk-Stiftung: H2-612-02.104