GlyConnect
GlyConnect integrates and centralizes glycomics and glycoproteomics data to standardize and consolidate site-specific glycosylation patterns and diverse glycan structures and to enable linkage with proteomics, genomics, and interactomics datasets.
Key Features:
- Centralized aggregation: Gathers and monitors glycomics and glycoproteomics data, including supplemental tables and localized laboratory servers, within the Glycomics@ExPASy portal.
- Data standardization: Standardizes and consolidates glycomics and glycoproteomics datasets to harmonize representations of glycan structures and site-specific glycosylation.
- Site-specific glycosylation mapping: Accommodates glycoproteins with annotated, site-specific glycosylation patterns.
- Glycan structure representation: Captures and stores diverse glycan structures associated with glycoproteins.
- Cross-omics connectivity: Connects glycoscience data with proteomics, genomics, and interactomics datasets.
- Visualization and monitoring: Visualizes glycoscience data and monitors aggregated datasets.
- Search and display: Enables searching and display of consolidated glycomics and glycoproteomics information.
Scientific Applications:
- Glycoprotein characterization: Analysis of site-specific glycosylation patterns on glycoproteins.
- Comparative glycomics and glycoproteomics: Consolidation of datasets from publications and laboratory servers for comparative studies.
- Cross-omics analyses: Linking glycosylation information with proteomics, genomics, and interactomics to study molecular contexts.
- Disease-related glycosylation studies: Investigation of glycoprotein glycosylation patterns in health and disease.
Methodology:
GlyConnect computationally gathers, monitors, standardizes, consolidates, integrates, visualizes, searches, displays, and connects glycomics and glycoproteomics datasets.
Topics
Collections
Details
- License:
- Unlicense
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 1/23/2019
- Last Updated:
- 6/16/2020
Operations
Publications
Alocci D, Mariethoz J, Gastaldello A, Gasteiger E, Karlsson NG, Kolarich D, Packer NH, Lisacek F. GlyConnect: Glycoproteomics Goes Visual, Interactive, and Analytical. Journal of Proteome Research. 2018;18(2):664-677. doi:10.1021/acs.jproteome.8b00766. PMID:30574787.
PMID: 30574787
Documentation
Links
Repository
https://glyconnect.expasy.org/