GlyConnect

GlyConnect integrates and centralizes glycomics and glycoproteomics data to standardize and consolidate site-specific glycosylation patterns and diverse glycan structures and to enable linkage with proteomics, genomics, and interactomics datasets.


Key Features:

  • Centralized aggregation: Gathers and monitors glycomics and glycoproteomics data, including supplemental tables and localized laboratory servers, within the Glycomics@ExPASy portal.
  • Data standardization: Standardizes and consolidates glycomics and glycoproteomics datasets to harmonize representations of glycan structures and site-specific glycosylation.
  • Site-specific glycosylation mapping: Accommodates glycoproteins with annotated, site-specific glycosylation patterns.
  • Glycan structure representation: Captures and stores diverse glycan structures associated with glycoproteins.
  • Cross-omics connectivity: Connects glycoscience data with proteomics, genomics, and interactomics datasets.
  • Visualization and monitoring: Visualizes glycoscience data and monitors aggregated datasets.
  • Search and display: Enables searching and display of consolidated glycomics and glycoproteomics information.

Scientific Applications:

  • Glycoprotein characterization: Analysis of site-specific glycosylation patterns on glycoproteins.
  • Comparative glycomics and glycoproteomics: Consolidation of datasets from publications and laboratory servers for comparative studies.
  • Cross-omics analyses: Linking glycosylation information with proteomics, genomics, and interactomics to study molecular contexts.
  • Disease-related glycosylation studies: Investigation of glycoprotein glycosylation patterns in health and disease.

Methodology:

GlyConnect computationally gathers, monitors, standardizes, consolidates, integrates, visualizes, searches, displays, and connects glycomics and glycoproteomics datasets.

Topics

Collections

Details

License:
Unlicense
Maturity:
Mature
Cost:
Free of charge
Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Added:
1/23/2019
Last Updated:
6/16/2020

Operations

Publications

Alocci D, Mariethoz J, Gastaldello A, Gasteiger E, Karlsson NG, Kolarich D, Packer NH, Lisacek F. GlyConnect: Glycoproteomics Goes Visual, Interactive, and Analytical. Journal of Proteome Research. 2018;18(2):664-677. doi:10.1021/acs.jproteome.8b00766. PMID:30574787.

Documentation

Training material
https://glyconnect.expasy.org/help
Tutorial material

Links