GlyTouCan
GlyTouCan assigns globally unique accession numbers to glycan structures to enable standardized identification and integration of glycan data across databases and research on glycan structure-function relationships.
Key Features:
- Universal Accession Numbers: Assigns unique identifiers to glycan entries covering monosaccharide compositions through fully defined structures.
- Handling Ambiguity: Represents and indexes varying levels of structural uncertainty, including glycans lacking linkage information, when assigning accession numbers.
- Integration Across Databases: Provides standardized identifiers to support cross-referencing and integration of glycan data across multiple databases.
Scientific Applications:
- Glycan interaction studies: Supports research into glycan interactions with lectins, viruses, and bacteria by providing stable identifiers for referenced structures.
- Cell signaling and communication: Facilitates investigation of glycans involved in signaling events and cell-cell communication by enabling unambiguous structure referencing.
- Data integration and comparative analyses: Enables cross-database mapping and reuse of glycan datasets for comparative and meta-analyses.
Methodology:
Assigns accession numbers to sets of monosaccharides constituting glycans, accepts input in any text format, and accommodates ambiguous or partially defined structures when indexing entries.
Topics
Details
- Tool Type:
- web application
- Added:
- 1/18/2021
- Last Updated:
- 1/25/2021
Operations
Publications
Fujita A, Aoki NP, Shinmachi D, Matsubara M, Tsuchiya S, Shiota M, Ono T, Yamada I, Aoki-Kinoshita KF. The international glycan repository GlyTouCan version 3.0. Nucleic Acids Research. 2020;49(D1):D1529-D1533. doi:10.1093/nar/gkaa947. PMID:33125071. PMCID:PMC7779025.
DOI: 10.1093/NAR/GKAA947
PMID: 33125071
Funding: - National Bioscience Database Center: 17934031
- National Institutes of Health: U01-GM125267-01