GlyTouCan

GlyTouCan assigns globally unique accession numbers to glycan structures to enable standardized identification and integration of glycan data across databases and research on glycan structure-function relationships.


Key Features:

  • Universal Accession Numbers: Assigns unique identifiers to glycan entries covering monosaccharide compositions through fully defined structures.
  • Handling Ambiguity: Represents and indexes varying levels of structural uncertainty, including glycans lacking linkage information, when assigning accession numbers.
  • Integration Across Databases: Provides standardized identifiers to support cross-referencing and integration of glycan data across multiple databases.

Scientific Applications:

  • Glycan interaction studies: Supports research into glycan interactions with lectins, viruses, and bacteria by providing stable identifiers for referenced structures.
  • Cell signaling and communication: Facilitates investigation of glycans involved in signaling events and cell-cell communication by enabling unambiguous structure referencing.
  • Data integration and comparative analyses: Enables cross-database mapping and reuse of glycan datasets for comparative and meta-analyses.

Methodology:

Assigns accession numbers to sets of monosaccharides constituting glycans, accepts input in any text format, and accommodates ambiguous or partially defined structures when indexing entries.

Topics

Details

Tool Type:
web application
Added:
1/18/2021
Last Updated:
1/25/2021

Operations

Publications

Fujita A, Aoki NP, Shinmachi D, Matsubara M, Tsuchiya S, Shiota M, Ono T, Yamada I, Aoki-Kinoshita KF. The international glycan repository GlyTouCan version 3.0. Nucleic Acids Research. 2020;49(D1):D1529-D1533. doi:10.1093/nar/gkaa947. PMID:33125071. PMCID:PMC7779025.

PMID: 33125071
Funding: - National Bioscience Database Center: 17934031 - National Institutes of Health: U01-GM125267-01

Links