GoogleGenomics
GoogleGenomics provides programmatic access to the Google Genomics API for retrieval and analysis of large-scale genomic datasets within R and the Bioconductor ecosystem.
Key Features:
- Integration with Google Genomics API: Enables programmatic query and retrieval of genomic datasets via the Google Genomics API.
- Interoperability with Bioconductor: Provides compatibility with other Bioconductor packages and workflows in R.
- Community-Driven Development: Developed and maintained within an open-source community contributing to the package codebase.
- Quality Assurance: Subject to Bioconductor initial review and continuous automated testing for package reliability and correctness.
Scientific Applications:
- Genomic Data Analysis: Access and analysis of large-scale genomic datasets for studies such as GWAS, population genetics, and personalized medicine.
- Interdisciplinary Research: Supports integration of genomic data with epidemiology, biostatistics, and computational biology investigations.
Methodology:
Implements R-based programmatic access to the Google Genomics API to perform data retrieval, manipulation, and analysis within the Bioconductor environment.
Topics
Collections
Details
- License:
- Apache-2.0
- Tool Type:
- command-line tool, library
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- R
- Added:
- 1/17/2017
- Last Updated:
- 11/25/2024
Operations
Data Inputs & Outputs
Query and retrieval
Publications
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Orchestrating high-throughput genomic analysis with Bioconductor. Nature Methods. 2015;12(2):115-121. doi:10.1038/nmeth.3252. PMID:25633503. PMCID:PMC4509590.