GraphCovidNet
GraphCovidNet applies Graph Isomorphic Network (GIN) graph neural network methods to CT scans and chest X-rays (CXRs) by converting images into undirected graphs to detect COVID-19.
Key Features:
- Graph Isomorphic Network (GIN): Implements a GIN-based architecture for learning from graph-structured representations of medical images.
- Imaging modalities: Operates on CT scans and chest X-rays (CXRs) as input image types.
- Graph conversion preprocessing: Converts image data into undirected graphs during preprocessing to represent structural information.
- Edge-focused representation: Emphasizes graph edges rather than entire raw images to capture relevant structural features for classification.
- Datasets evaluated: Evaluated on the SARS-COV-2 Ct-Scan dataset, COVID-CT dataset, a combination of the covid-chestxray-dataset and Chest X-Ray Images (Pneumonia) dataset, and the CMSC-678-ML-Project dataset.
- Performance: Reported overall accuracy of 99% across these datasets and perfect accuracy in binary classification tasks distinguishing COVID-19 from non-COVID-19 scans.
Scientific Applications:
- COVID-19 detection in medical imaging: Classifies CT and CXR scans to identify COVID-19-related findings.
- Binary classification tasks: Separates COVID-19 scans from non-COVID-19 scans with reported perfect binary accuracy.
Methodology:
Images are preprocessed into undirected graphs that emphasize edges, and a Graph Isomorphic Network (GIN) is trained on those graph representations; the model was evaluated on the SARS-COV-2 Ct-Scan, COVID-CT, covid-chestxray combined with Chest X-Ray Images (Pneumonia), and CMSC-678-ML-Project datasets.
Topics
Collections
Details
- Tool Type:
- command-line tool
- Programming Languages:
- Python
- Added:
- 9/20/2021
- Last Updated:
- 9/20/2021
Operations
Data Inputs & Outputs
Network analysis
Outputs
Publications
Saha P, Mukherjee D, Singh PK, Ahmadian A, Ferrara M, Sarkar R. RETRACTED ARTICLE: GraphCovidNet: A graph neural network based model for detecting COVID-19 from CT scans and X-rays of chest. Scientific Reports. 2021;11(1). doi:10.1038/s41598-021-87523-1. PMID:33859222. PMCID:PMC8050058.