graphkernels

graphkernels is an R tool to measure the similarity of graphs. The graphkernels algorithm includes functions for simple kernels between vertex and edge label histograms, the Weisfeiler-Lehman graph, graphlet, and random walk kernels.

Topic

Machine learning;Data visualisation;Statistics and probability

Detail

  • Operation: Sample comparison

  • Software interface: Library

  • Language: R, C++, Python

  • License: GNU General Public License v2 | v3

  • Cost: Free

  • Version name: 1.6.1

  • Credit: JSPS KAKENHIHorizon 2020 project CDS-QUAMRI.

  • Input: -

  • Output: -

  • Contact: Mahito Sugiyama mahito@nii.ac.jp

  • Collection: -

  • Maturity: Stable

Publications

  • graphkernels: R and Python packages for graph comparison.
  • Sugiyama M, Ghisu ME, Llinares-López F, Borgwardt K. graphkernels: R and Python packages for graph comparison. Bioinformatics. 2018 Feb 1;34(3):530-532. doi: 10.1093/bioinformatics/btx602. PMID: 29028902; PMCID: PMC5860361.
  • https://doi.org/10.1093/bioinformatics/btx602
  • PMID: 29028902
  • PMC: PMC5860361

Download and documentation

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