GridScore

GridScore facilitates standardized phenotypic data collection and visualization to support plant breeding and crop research.


Key Features:

  • Web Technology Integration: Uses web technologies to replicate printed field plans and present a top-down overview of field layouts.
  • Georeferencing: Integrates georeferencing to record spatial coordinates alongside phenotypic observations.
  • Image Tagging: Associates tagged images with plot identifiers and trait observations for visual documentation.
  • Speech Recognition: Incorporates speech recognition to capture verbal phenotype annotations.
  • Barcode-Based Systems: Links plant varieties and trial plots to recorded data via barcode identification.
  • Guided Data Collection: Implements guided workflows to structure phenotyping protocols and trait scoring.
  • Data Visualization: Visualizes phenotypic measurements and previously recorded data within field-layout views.

Scientific Applications:

  • Plant Breeding Trials: Captures trait data across plant varieties for breeding experiments and trial evaluations.
  • Large-Scale Phenotyping: Supports field phenotyping trials that assess multiple traits across many plots.
  • Genetic Mapping and Association Studies: Produces phenotype datasets suitable for genetic mapping and association analyses.
  • Selection and Crop Improvement: Provides phenotype records that inform selection decisions and crop improvement strategies.

Methodology:

Combines barcode-based systems with a structured data collection methodology, uses web technologies to present a top-down field-plan view, and integrates georeferencing, image tagging, speech recognition, and previously recorded data to identify plots requiring further scoring.

Topics

Details

Cost:
Free of charge
Tool Type:
web application
Operating Systems:
Mac, Linux, Windows
Added:
9/16/2022
Last Updated:
11/24/2024

Operations

Publications

Raubach S, Schreiber M, Shaw PD. GridScore: a tool for accurate, cross-platform phenotypic data collection and visualization. BMC Bioinformatics. 2022;23(1). doi:10.1186/s12859-022-04755-2. PMID:35668357. PMCID:PMC9169276.

PMID: 35668357
PMCID: PMC9169276
Funding: - Biotechnology and Biological Sciences Research Council: BB/S004610/1