GRINdb

GRINdb curates and aggregates genetic, functional, and clinical variant data for GRIN genes encoding N-methyl-D-aspartate receptor (NMDAR) subunits to support interpretation of variants affecting glutamatergic neurotransmission.


Key Features:

  • Curated Repository: Consolidates data from over 4,000 GRIN variants into a unified, nonredundant collection of genetic, functional, and clinical information.
  • Clinical Relevance: Supports molecular stratification of patients with GRIN-related disorders (GRDs), including rare pediatric neurological conditions caused by NMDAR dysfunction.
  • Pathogenicity Mapping: Maps genetic and clinical information of GRIN variants onto the N-methyl-D-aspartate receptor (NMDAR) structure to reveal differences in pathogenicity and associated clinical phenotypes.
  • Facilitates Patient Stratification: Bridges variant identification and patient stratification to inform molecular clinical advice and research into GRDs.

Scientific Applications:

  • Genotype–Phenotype Correlation: Enables analysis of correlations between specific GRIN variants and clinical phenotypes in GRDs.
  • Functional Impact Investigation: Supports investigation of the functional consequences of individual GRIN variants on NMDAR subunits.
  • Therapeutic Strategy Development: Provides variant-level data to inform development of targeted therapeutic strategies for NMDAR-related pathologies.
  • Clinical Interpretation: Informs diagnostic assessment and personalized treatment planning through integrated genetic, functional, and clinical evidence.

Methodology:

Rigorous manual curation of genetic, clinical, and functional data for GRIN gene variants; mapping of genetic and clinical variant data onto N-methyl-D-aspartate receptor (NMDAR) structural models.

Topics

Details

Tool Type:
web application
Added:
1/18/2021
Last Updated:
1/25/2021

Operations

Publications

García‐Recio A, Santos‐Gómez A, Soto D, Julia‐Palacios N, García‐Cazorla À, Altafaj X, Olivella M. <i>GRIN</i> database: A unified and manually curated repertoire of <i>GRIN</i> variants. Human Mutation. 2020;42(1):8-18. doi:10.1002/humu.24141. PMID:33252190.

PMID: 33252190
Funding: - Ministerio de Ciencia e Innovación: BFU2017‐83317‐P, SAF2016‐77830‐R - Instituto de Salud Carlos III: PI16/00851, PI19/00348

Links