gtrellis
The gtrellis software package enhances the visualization of genomic data using Trellis graphics. Trellis graphics, a method that divides data based on one or more categorical variables and presents it in a grid of panels, are widely used in genomic data analysis. They help in comparing statistics across different categories and uncover multivariate relationships. However, existing software for Trellis graphics often must meet the unique requirements of genomic data visualization.
gtrellis addresses these limitations by offering an efficient, flexible, and extensible approach to displaying genomic data in a Trellis layout. One of its key strengths is the highly customizable layout options, which allow users to organize genomic categories within the plot effectively. This customization is particularly valuable in genomics, where data can vary significantly in structure and complexity.
Another significant feature of gtrellis is its support for multiple-track visualization. This capability enables users to display various properties of genomic data simultaneously, facilitating a deeper understanding of complex relationships within the data. Visualizing multiple aspects in parallel is crucial for thorough genomic analysis.
Moreover, gtrellis is extensible, allowing users to add their custom graphics. This flexibility makes it a versatile tool that can cater to a wide range of specific visualization needs in genomics.
Topic
Omics;Genomics;Sequencing
Detail
Operation: Genome visualisation;Genome annotation
Software interface: Command-line user interface;Library
Language: R
License: The MIT Licence + file license
Cost: Free
Version name: 1.28.0
Credit: tTe German Cancer Research Center-Heidelberg Center Personalized Oncology, the BMBF-funded de.NBI HD-HuB network.
Input: -
Output: -
Contact: Zuguang Gu z.gu@dkfz.de
Collection: -
Maturity: Stable
Publications
- gtrellis: an R/Bioconductor package for making genome-level Trellis graphics.
- Gu Z, Eils R, Schlesner M. gtrellis: an R/Bioconductor package for making genome-level Trellis graphics. BMC Bioinformatics. 2016 Apr 18;17:169. doi: 10.1186/s12859-016-1051-4. PMID: 27089965; PMCID: PMC4835841.
- https://doi.org/10.1186/s12859-016-1051-4
- PMID: 27089965
- PMC: PMC4835841
Download and documentation
Source: http://bioconductor.org/packages/release/bioc/bin/windows/contrib/4.2/gtrellis_1.28.0.zip
Documentation: http://bioconductor.org/packages/release/bioc/manuals/gtrellis/man/gtrellis.pdf
Home page: http://bioconductor.org/packages/release/bioc/html/gtrellis.html
Links: http://bioconductor.org/packages/release/bioc/news/gtrellis/NEWS
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