GTZ

GTZ compresses and transmits FASTQ-format next-generation sequencing (NGS) data losslessly to enable efficient storage and cloud transfer.


Key Features:

  • Lossless Compression: Performs fast, lossless compression of FASTQ files while preserving the original file contents.
  • Integrated Compression and Transmission: Combines compression and cloud transmission into a single process to optimize data transfer workflows.
  • Optimized for FASTQ Files: Tailored to handle the structure and requirements of FASTQ files produced by NGS experiments.

Scientific Applications:

  • Cloud storage of large sequencing datasets: Enables efficient storage of large NGS FASTQ datasets in cloud environments.
  • Laboratory data management: Supports laboratories in streamlining NGS data management by reducing storage and transfer demands.
  • Frequent data transfer between local and cloud: Facilitates repeated transmission of genomic data between local systems and cloud services.

Methodology:

Performs fast, lossless compression of FASTQ files and integrates compression with cloud transmission.

Topics

Details

Tool Type:
command-line tool
Added:
7/14/2018
Last Updated:
12/10/2018

Operations

Publications

Xing Y, Li G, Wang Z, Feng B, Song Z, Wu C. GTZ: a fast compression and cloud transmission tool optimized for FASTQ files. BMC Bioinformatics. 2017;18(S16). doi:10.1186/s12859-017-1973-5. PMID:29297296. PMCID:PMC5751770.

Documentation