GTZ
GTZ compresses and transmits FASTQ-format next-generation sequencing (NGS) data losslessly to enable efficient storage and cloud transfer.
Key Features:
- Lossless Compression: Performs fast, lossless compression of FASTQ files while preserving the original file contents.
- Integrated Compression and Transmission: Combines compression and cloud transmission into a single process to optimize data transfer workflows.
- Optimized for FASTQ Files: Tailored to handle the structure and requirements of FASTQ files produced by NGS experiments.
Scientific Applications:
- Cloud storage of large sequencing datasets: Enables efficient storage of large NGS FASTQ datasets in cloud environments.
- Laboratory data management: Supports laboratories in streamlining NGS data management by reducing storage and transfer demands.
- Frequent data transfer between local and cloud: Facilitates repeated transmission of genomic data between local systems and cloud services.
Methodology:
Performs fast, lossless compression of FASTQ files and integrates compression with cloud transmission.
Topics
Details
- Tool Type:
- command-line tool
- Added:
- 7/14/2018
- Last Updated:
- 12/10/2018
Operations
Publications
Xing Y, Li G, Wang Z, Feng B, Song Z, Wu C. GTZ: a fast compression and cloud transmission tool optimized for FASTQ files. BMC Bioinformatics. 2017;18(S16). doi:10.1186/s12859-017-1973-5. PMID:29297296. PMCID:PMC5751770.