h5vc

H5VC is a data management software tool designed to simplify the analysis of large sets of genome sequencing data, such as exomes and whole genomes. It provides a tally data structure for storing counts of nucleotides, samples, strands, and genomic positions. The software includes a range of features, such as data visualization, quality assessment, and statistical computation, to facilitate the analysis of SNVs and InDels, copy-number estimation, and mutation spectrum analysis.

Topic

Sequencing

Detail

  • Operation: Correlation

  • Software interface: Library

  • Language: R

  • License: GNU General Public License v3

  • Cost: Free

  • Version name: 2.32.0

  • Credit: The European Commission through the Seventh Framework Programme Health project Radiant.

  • Input: BAM

  • Output: -

  • Contact: Paul Theodor Pyl paul.theodor.pyl@gmail.com

  • Collection: -

  • Maturity: Mature

Publications

Download and documentation


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