HCC segmentation tool for contrast-enhanced abdominal CT
Features an nnU-Net based segmentation tool capable of performing HCC segmentation for both arterial and portal venous phase in polyphasic contrast-enhanced abdominal CT.
Please be mindful that the usage instructions below are for the image in the EUCAIM Harbor.
Topics
Collections
Details
- License:
- CC-BY-NC-4.0
- Maturity:
- Emerging
- Cost:
- Free of charge (with restrictions)
- Tool Type:
- command-line tool
- Operating Systems:
- Linux
- Programming Languages:
- Python
- Added:
- 11/4/2025
- Last Updated:
- 9/29/2026
Operations
Data Inputs & Outputs
Image annotation
Inputs
Outputs
Image annotation
Inputs
Outputs
Documentation
API documentation
https://gist.github.com/josegcpa/47ba1bf2bb425db111393e2c135d97e6Contains the documentation required to run the Docker image.
Links
Repository
https://github.com/josegcpa/nnunet_serve(This is the nnunet_serve repository, containing the generic nnU-Net building and serving functionalities used by the Computational Clinical Imaging Group at Champalimaud Foundation.)
Related Tools
nnunet
Relation: uses