HDX WorkBench
HDX WorkBench analyzes hydrogen/deuterium exchange mass spectrometry (HDX-MS) data to quantify protein conformational dynamics and map structural changes.
Key Features:
- Automation: Automates data handling and processing steps for HDX-MS experiments.
- Data Management: Organizes and stores large HDX-MS datasets for systematic access and workflow integration.
- Visualization: Generates graphical representations of HDX-MS data to aid interpretation of protein dynamics and conformational changes.
- Statistical Cross-Comparison: Performs statistical comparisons across datasets to validate experimental differences across conditions or time points.
- Real-Time Analysis: Supports validated data analysis at the rate of generation to provide timely results during experiments.
Scientific Applications:
- Structural Biology: Enables analysis of protein conformation and dynamics from HDX-MS experiments.
- Drug Discovery: Supports investigation of conformational changes and interaction networks relevant to target characterization.
- Biophysics: Assists quantitative characterization of protein structural dynamics and interaction networks under different physiological conditions.
Methodology:
Automated data handling combined with visualization and statistical cross-comparison methods for validated, real-time analysis of high-throughput HDX-MS datasets.
Topics
Collections
Details
- License:
- Other
- Tool Type:
- desktop application
- Operating Systems:
- Windows
- Programming Languages:
- Java
- Added:
- 1/17/2017
- Last Updated:
- 11/24/2024
Operations
Data Inputs & Outputs
Protein hydrogen exchange rate calculation
Publications
Pascal BD, Willis S, Lauer JL, Landgraf RR, West GM, Marciano D, Novick S, Goswami D, Chalmers MJ, Griffin PR. HDX Workbench: Software for the Analysis of H/D Exchange MS Data. Journal of the American Society for Mass Spectrometry. 2012;23(9):1512-1521. doi:10.1007/s13361-012-0419-6. PMID:22692830. PMCID:PMC3808162.
Documentation
Links
Software catalogue
http://ms-utils.org