HemI
HemI visualizes multi-dimensional gene and protein expression data as heatmaps to reveal expression patterns and molecular dynamics across experimental conditions.
Key Features:
- Customizable Heatmap Visualization: Supports recoloring, rescaling, and rotation of heatmaps to tailor representation of numerical gene and protein expression data.
- Clustering Strategies: Implements multiple clustering strategies and robust clustering algorithms to identify patterns and groupings within datasets.
- Publication-Quality Export: Exports figures in publication-quality format suitable for inclusion in scientific reports and publications.
- High-Throughput Data Handling: Handles multi-dimensional and numerical datasets generated by high-throughput techniques for gene and protein expression analysis.
Scientific Applications:
- Genomics: Enables visualization and exploration of gene expression patterns across experimental conditions.
- Proteomics: Facilitates visualization of protein expression and assessment of protein-level molecular dynamics.
- Systems Biology: Supports analysis of molecular dynamics and pattern discovery at the systems level across conditions.
Methodology:
Processes high-throughput gene and protein expression data using customizable visualization options and clustering algorithms.
Topics
Details
- Tool Type:
- desktop application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 5/19/2018
- Last Updated:
- 12/10/2018
Operations
Publications
Deng W, Wang Y, Liu Z, Cheng H, Xue Y. HemI: A Toolkit for Illustrating Heatmaps. PLoS ONE. 2014;9(11):e111988. doi:10.1371/journal.pone.0111988. PMID:25372567. PMCID:PMC4221433.