HemI

HemI visualizes multi-dimensional gene and protein expression data as heatmaps to reveal expression patterns and molecular dynamics across experimental conditions.


Key Features:

  • Customizable Heatmap Visualization: Supports recoloring, rescaling, and rotation of heatmaps to tailor representation of numerical gene and protein expression data.
  • Clustering Strategies: Implements multiple clustering strategies and robust clustering algorithms to identify patterns and groupings within datasets.
  • Publication-Quality Export: Exports figures in publication-quality format suitable for inclusion in scientific reports and publications.
  • High-Throughput Data Handling: Handles multi-dimensional and numerical datasets generated by high-throughput techniques for gene and protein expression analysis.

Scientific Applications:

  • Genomics: Enables visualization and exploration of gene expression patterns across experimental conditions.
  • Proteomics: Facilitates visualization of protein expression and assessment of protein-level molecular dynamics.
  • Systems Biology: Supports analysis of molecular dynamics and pattern discovery at the systems level across conditions.

Methodology:

Processes high-throughput gene and protein expression data using customizable visualization options and clustering algorithms.

Topics

Details

Tool Type:
desktop application
Operating Systems:
Linux, Windows, Mac
Added:
5/19/2018
Last Updated:
12/10/2018

Operations

Publications

Deng W, Wang Y, Liu Z, Cheng H, Xue Y. HemI: A Toolkit for Illustrating Heatmaps. PLoS ONE. 2014;9(11):e111988. doi:10.1371/journal.pone.0111988. PMID:25372567. PMCID:PMC4221433.

Documentation