HExpoChem

HExpoChem integrates curated chemical exposure and chemical-protein interaction data with protein and chemical interaction networks to enable exploration of molecular mechanisms and assessment of potential human health risks from environmental chemicals.


Key Features:

  • Integration of Chemical-Protein Interactions: Focuses on interactions between environmental chemicals and human proteins to link chemicals to molecular targets.
  • Enriched Interaction Networks: Enhances chemical-protein interaction data with a quality-scored human protein-protein interaction network, a protein-protein association network, and a chemical-chemical interaction network.
  • Analysis of Protein Complexes and Phenotypic Outcome Enrichment: Leverages enriched networks to study protein complex formation and the enrichment of phenotypic outcomes to support prediction of potential adverse health effects.

Scientific Applications:

  • Pathway disruption analysis: Investigates how specific chemicals may disrupt biological pathways.
  • Biomarker identification: Identifies potential biomarkers of chemical exposure through protein interaction networks.
  • Phenotypic outcome assessment: Explores broader implications of chemical interactions on human health by examining phenotypic outcomes and predicting adverse effects.

Methodology:

Curating and integrating diverse datasets related to environmental chemicals, their bioactivities, and various interaction networks.

Topics

Details

License:
Other
Maturity:
Emerging
Cost:
Free of charge (with restrictions)
Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Programming Languages:
PHP
Added:
1/21/2015
Last Updated:
1/9/2019

Operations

Publications

Taboureau O, Jacobsen UP, Kalhauge C, Edsgärd D, Rigina O, Gupta R, Audouze K. HExpoChem: a systems biology resource to explore human exposure to chemicals. Bioinformatics. 2013;29(9):1231-1232. doi:10.1093/bioinformatics/btt112. PMID:23479352.

Documentation

Links

Software catalogue
http://cbs.dtu.dk/services