HFOApp

HFOApp detects and annotates high-frequency oscillations (HFOs) in intracranial electroencephalographic (iEEG) recordings to identify and characterize epileptogenic tissue for epilepsy research and surgical planning.


Key Features:

  • MATLAB implementation: Implemented in MATLAB for computational processing of iEEG data.
  • Interactive automation-assist: Combines automated detection with manual marking to support reviewer-guided annotation.
  • Manual marking capabilities: Enables manual annotation and refinement of detected HFO events.
  • Simultaneous multichannel detection and marking: Performs detection and marking across multiple channels concurrently for multichannel electrophysiological datasets.
  • Time and reliability improvement: Aims to reduce review and manual annotation time and to improve inter-rater reliability.
  • HFO biomarker targeting: Specifically targets high-frequency oscillations as biomarkers of epileptogenic tissue in iEEG recordings.

Scientific Applications:

  • Epileptogenic zone localization: Identification and characterization of HFOs in iEEG recordings to inform surgical planning and localize epileptogenic tissue.
  • Treatment efficacy assessment: Quantification of HFOs to assess treatment effects and surgical outcomes.
  • Electrophysiological research: Streamlining marking and quantification of HFOs to facilitate analysis of electrophysiological datasets and study of epileptogenic mechanisms.

Methodology:

Implemented in MATLAB; integrates automated detection with manual marking and supports simultaneous multichannel detection and marking of HFOs in iEEG recordings.

Topics

Details

License:
GPL-3.0
Cost:
Free of charge
Tool Type:
library
Operating Systems:
Mac, Linux, Windows
Programming Languages:
MATLAB, Python
Added:
3/1/2022
Last Updated:
3/1/2022

Operations

Publications

Zhou G, Noto T, Sharma A, Yang Q, González Otárula KA, Tate M, Templer JW, Lane G, Zelano C. HFOApp: A MATLAB Graphical User Interface for High-Frequency Oscillation Marking. eneuro. 2021;8(5):ENEURO.0509-20.2021. doi:10.1523/eneuro.0509-20.2021. PMID:34544760. PMCID:PMC8503963.

PMID: 34544760
PMCID: PMC8503963
Funding: - HHS | NIH | National Institute on Deafness and Other Communication Disorders: R01-DC-016364, R01-DC-018539

Documentation