HFOApp
HFOApp detects and annotates high-frequency oscillations (HFOs) in intracranial electroencephalographic (iEEG) recordings to identify and characterize epileptogenic tissue for epilepsy research and surgical planning.
Key Features:
- MATLAB implementation: Implemented in MATLAB for computational processing of iEEG data.
- Interactive automation-assist: Combines automated detection with manual marking to support reviewer-guided annotation.
- Manual marking capabilities: Enables manual annotation and refinement of detected HFO events.
- Simultaneous multichannel detection and marking: Performs detection and marking across multiple channels concurrently for multichannel electrophysiological datasets.
- Time and reliability improvement: Aims to reduce review and manual annotation time and to improve inter-rater reliability.
- HFO biomarker targeting: Specifically targets high-frequency oscillations as biomarkers of epileptogenic tissue in iEEG recordings.
Scientific Applications:
- Epileptogenic zone localization: Identification and characterization of HFOs in iEEG recordings to inform surgical planning and localize epileptogenic tissue.
- Treatment efficacy assessment: Quantification of HFOs to assess treatment effects and surgical outcomes.
- Electrophysiological research: Streamlining marking and quantification of HFOs to facilitate analysis of electrophysiological datasets and study of epileptogenic mechanisms.
Methodology:
Implemented in MATLAB; integrates automated detection with manual marking and supports simultaneous multichannel detection and marking of HFOs in iEEG recordings.
Topics
Details
- License:
- GPL-3.0
- Cost:
- Free of charge
- Tool Type:
- library
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- MATLAB, Python
- Added:
- 3/1/2022
- Last Updated:
- 3/1/2022
Operations
Publications
Zhou G, Noto T, Sharma A, Yang Q, González Otárula KA, Tate M, Templer JW, Lane G, Zelano C. HFOApp: A MATLAB Graphical User Interface for High-Frequency Oscillation Marking. eneuro. 2021;8(5):ENEURO.0509-20.2021. doi:10.1523/eneuro.0509-20.2021. PMID:34544760. PMCID:PMC8503963.
PMID: 34544760
PMCID: PMC8503963
Funding: - HHS | NIH | National Institute on Deafness and Other Communication Disorders: R01-DC-016364, R01-DC-018539