HisPhosSite
HisPhosSite curates experimentally validated and putative histidine phosphorylation (pHis) proteins and sites to provide a centralized repository for studying pHis across species.
Key Features:
- Extensive Data Collection: Contains 776 verified histidine phosphorylation sites and 2,702 verified pHis proteins across 38 eukaryotic and prokaryotic species, and compiles 15,378 putative pHis sites and 10,816 putative pHis proteins from a dataset covering 1,366 species.
- Curated Annotations: Provides structural and functional annotations for each pHis site and protein to support biological interpretation.
- Advanced Search Capabilities: Implements multiple search engines including motif searches and BLAST searches to locate specific pHis sites or proteins.
- Ortholog Search Integration: Integrates ortholog searches to enable comparative analyses and functional predictions across species.
Scientific Applications:
- Cellular signaling and regulation: Enables investigation of pHis roles in signal transduction, cell cycle regulation, proliferation, differentiation, and apoptosis.
- Disease mechanism studies: Supports research into disease mechanisms where histidine phosphorylation is implicated, including cancer.
- Comparative and evolutionary analysis: Facilitates cross-species comparisons of pHis sites and proteins using ortholog data.
- Site-level proteomics research: Provides a resource for site-specific and systemic studies of histidine phosphorylation in proteomics contexts.
Methodology:
Experimentally validated pHis proteins and sites were curated from published literature, and putative sites and proteins were integrated through ortholog searches.
Topics
Details
- Tool Type:
- web application
- Added:
- 9/27/2021
- Last Updated:
- 9/27/2021
Operations
Publications
Zhao J, Zou L, Li Y, Liu X, Zeng C, Xu C, Jiang B, Guo X, Song X. HisPhosSite: A comprehensive database of histidine phosphorylated proteins and sites. Journal of Proteomics. 2021;243:104262. doi:10.1016/j.jprot.2021.104262. PMID:33984507.
PMID: 33984507
Funding: - National Key Research and Development Program of China: 2016YFA0503300
- National Natural Science Foundation of China: 61973155, 62003165, 81771641, 81971439, 82001611
- China Postdoctoral Science Foundation: 2019M661817
- Fok Ying Tung Education Foundation: 161037