Hpul

Hpul provides genome and transcriptome resources and analytical capabilities to support genomic, transcriptomic, and experimental research on the sea urchin Hemicentrotus pulcherrimus.


Key Features:

  • Genome and Transcriptome Data: Comprehensive genome and transcriptome datasets for Hemicentrotus pulcherrimus available for bulk download and analysis.
  • Gene Search: Identification and retrieval of gene sequences and annotations within the H. pulcherrimus genome.
  • Homology Search: Detection of homologous sequences to support evolutionary and comparative genomics analyses.
  • Genome Browsing: Visual exploration of genomic coordinates, annotations, and features.
  • Experimental Protocols: Curated experimental protocols relevant to laboratory studies on H. pulcherrimus.

Scientific Applications:

  • Evolutionary Biology: Comparative genomics and homology analyses to investigate evolutionary relationships of H. pulcherrimus.
  • Developmental Biology: Gene expression and transcriptome resources to study developmental processes in H. pulcherrimus.
  • Cell Biology: Genomic and transcriptomic data to support studies of cellular processes and gene function.
  • Experimental Research: Integration of protocols with genomic resources to support laboratory experiments and reproducibility.

Methodology:

Provides bulk data downloads and interactive analysis tools to retrieve large datasets and perform detailed analyses, and integrates experimental protocols with genomic and transcriptomic resources.

Topics

Details

Tool Type:
api, web application
Added:
1/18/2021
Last Updated:
1/30/2021

Operations

Publications

Kinjo S, Kiyomoto M, Yamamoto T, Ikeo K, Yaguchi S. Usage of the Sea Urchin Hemicentrotus pulcherrimus Database, HpBase. Methods in Molecular Biology. 2020. doi:10.1007/978-1-0716-0974-3_17. PMID:33074547.