Hpul
Hpul provides genome and transcriptome resources and analytical capabilities to support genomic, transcriptomic, and experimental research on the sea urchin Hemicentrotus pulcherrimus.
Key Features:
- Genome and Transcriptome Data: Comprehensive genome and transcriptome datasets for Hemicentrotus pulcherrimus available for bulk download and analysis.
- Gene Search: Identification and retrieval of gene sequences and annotations within the H. pulcherrimus genome.
- Homology Search: Detection of homologous sequences to support evolutionary and comparative genomics analyses.
- Genome Browsing: Visual exploration of genomic coordinates, annotations, and features.
- Experimental Protocols: Curated experimental protocols relevant to laboratory studies on H. pulcherrimus.
Scientific Applications:
- Evolutionary Biology: Comparative genomics and homology analyses to investigate evolutionary relationships of H. pulcherrimus.
- Developmental Biology: Gene expression and transcriptome resources to study developmental processes in H. pulcherrimus.
- Cell Biology: Genomic and transcriptomic data to support studies of cellular processes and gene function.
- Experimental Research: Integration of protocols with genomic resources to support laboratory experiments and reproducibility.
Methodology:
Provides bulk data downloads and interactive analysis tools to retrieve large datasets and perform detailed analyses, and integrates experimental protocols with genomic and transcriptomic resources.
Topics
Details
- Tool Type:
- api, web application
- Added:
- 1/18/2021
- Last Updated:
- 1/30/2021
Operations
Publications
Kinjo S, Kiyomoto M, Yamamoto T, Ikeo K, Yaguchi S. Usage of the Sea Urchin Hemicentrotus pulcherrimus Database, HpBase. Methods in Molecular Biology. 2020. doi:10.1007/978-1-0716-0974-3_17. PMID:33074547.
PMID: 33074547