Human AGEs
Human AGEs integrates and visualizes genomic, archaeological, and anthropological data across space and time to support archeogenomic analyses of human populations and their history.
Key Features:
- Spatio-Temporal Visualization: Spatio-temporal visualizations integrate genomic data including ancient DNA (aDNA) with archaeological and anthropological information to represent changes across time and geography.
- Multi-Layered Data Display: Map-based multi-layer displays (bubble charts, pie charts, heatmaps, tag clouds) enable layered representation and simultaneous inspection of diverse data types.
- Customization Options: Clustering, filtering, and styling options allow tailoring of visual representations to specific analytical needs.
- Graph Database Integration: Integration with a pre-existing graph database of archeogenomic records supports linking and querying heterogeneous genomic and contextual data.
- Data Export and Session Management: Export of map state as high-resolution images and saving of session files enables preservation and sharing of analytical states.
Scientific Applications:
- Population relationships and migration: Exploration of relationships among ancient populations and reconstruction of migration patterns using integrated genomic and contextual data.
- Cultural and anthropological contextualization: Linking genetic findings to archaeological and cultural development to interpret past human behavior and social change.
- Spatio-temporal synthesis of archeogenomic datasets: Construction of time-resolved, geographically explicit narratives of human history and evolution from heterogeneous datasets.
Methodology:
Integration of genomic data (including ancient DNA, aDNA) with archaeological and anthropological metadata via a graph database, followed by generation of spatio-temporal visualizations using map-based multilayer displays (bubble charts, pie charts, heatmaps, tag clouds) with clustering, filtering, and export to high-resolution image and session file.
Topics
Details
- License:
- MIT
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Mac, Windows, Linux
- Programming Languages:
- JavaScript
- Added:
- 1/10/2024
- Last Updated:
- 1/10/2024
Operations
Publications
Ciecierski L, Stolarek I, Figlerowicz M. Human AGEs: an interactive spatio-temporal visualization and database of human archeogenomics. Nucleic Acids Research. 2023;51(W1):W269-W273. doi:10.1093/nar/gkad428. PMID:37216609. PMCID:PMC10320146.