HyperSeed
HyperSeed performs nondestructive hyperspectral imaging and computational analysis of seeds to measure seed quality and enable spectral feature discovery and classification across the 600–1700 nm range.
Key Features:
- Hyperspectral Imaging: Uses a line-scan image spectrograph to capture hyperspectral images of seeds across 600 to 1700 nm for nondestructive measurement.
- Background Removal and Segmentation: Performs background removal and precise segmentation of individual seeds to isolate seed-specific spectral data.
- Output Data Products: Generates hyperspectral cubes and spectral curves for each seed.
- Spectral Analysis: Conducts systematic analysis of spectral curves to identify biologically significant wavelengths and infer biochemical properties.
- Machine Learning Integration: Integrates traditional machine learning models and neural network models, including a 3D convolutional neural network (3D CNN), for classification tasks.
- Performance Metrics: The implemented 3D CNN achieved 97.5% seed-based classification accuracy and 94.21% pixel-based classification accuracy.
Scientific Applications:
- Seed Quality Assessment: Enables nondestructive evaluation and differentiation of seeds based on spectral traits relevant to quality.
- Environmental Stress Detection: Differentiates seeds affected by environmental stressors such as heat.
- Crop Improvement and Climate Response Studies: Classifies seeds from different environments to support studies of plant responses to climate change and crop production optimization.
Methodology:
Capture hyperspectral images with a line-scan image spectrograph (600–1700 nm); perform background removal and precise seed segmentation; generate per-seed hyperspectral cubes and spectral curves; analyze spectral curves to identify significant wavelengths; apply traditional machine learning and neural network models, including a 3D CNN (reported accuracies: 97.5% seed-based, 94.21% pixel-based).
Topics
Details
- License:
- Not licensed
- Cost:
- Free of charge
- Tool Type:
- desktop application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- MATLAB
- Added:
- 5/24/2022
- Last Updated:
- 5/24/2022
Operations
Publications
Gao T, Chandran AKN, Paul P, Walia H, Yu H. HyperSeed: An End-to-End Method to Process Hyperspectral Images of Seeds. Sensors. 2021;21(24):8184. doi:10.3390/s21248184. PMID:34960287. PMCID:PMC8703337.