Hystorian

Hystorian provides Python-based conversion, storage, and processing of materials characterization datasets by converting proprietary formats to HDF5 to improve traceability, reproducibility, and archival of experimental data.


Key Features:

  • Data Conversion and Storage: Converts proprietary data formats into open hierarchical data format (HDF5) files for standardized, interoperable dataset storage.
  • Workflow Management: Automatically stores datasets together with their corresponding processing workflows in a single location.
  • Traceability and Reproducibility: Maintains comprehensive records of data processing steps to support traceability and reproducibility.
  • Extensibility and Integration: Includes a basic toolkit for scanning probe microscopy and x-ray diffraction analysis and can wrap over pre-existing processing functions to extend functionality.

Scientific Applications:

  • Materials data management: Centralizes and standardizes large-scale materials characterization datasets for interoperability and archival.
  • Correlative characterization analysis: Enables integration and joint analysis of data from multiple techniques, including scanning probe microscopy and x-ray diffraction.

Methodology:

Implemented in Python, Hystorian converts proprietary formats to HDF5, stores datasets with their processing workflows, records processing steps for traceability, and provides a basic toolkit for scanning probe microscopy and x-ray diffraction with the ability to wrap pre-existing processing functions.

Topics

Details

License:
CC-BY-4.0
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Mac, Linux, Windows
Programming Languages:
Python
Added:
12/6/2021
Last Updated:
12/6/2021

Operations

Publications

Musy L, Bulanadi R, Gaponenko I, Paruch P. Hystorian: A processing tool for scanning probe microscopy and other n-dimensional datasets. Ultramicroscopy. 2021;228:113345. doi:10.1016/j.ultramic.2021.113345. PMID:34214695.

PMID: 34214695
Funding: - Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung: 200021_178782