iGMDR
iGMDR aggregates predictive genetic models from pharmacogenetic studies to enable analysis of genome–drug interactions and prediction of anticancer drug sensitivity and toxicity.
Key Features:
- Integrated Resource: Consolidates predictive models from diverse pharmacogenetic studies, including both clinical and preclinical models.
- Genome–Drug Interaction Mining: Enables exploration of relationships between anticancer drugs and individual genomes to link genetic heterogeneity with drug response.
- Predictive Models: Hosts models that relate genetic alterations to drug sensitivity and toxicity for anticancer agents.
- Data Storage: Stores integrated genetic models and associated metadata in a MySQL database format.
Scientific Applications:
- Pharmacogenetics research: Assess genetic determinants of drug sensitivity and toxicity to inform biomarker discovery.
- Personalized oncology: Predict individual responses to anticancer therapies by mining genome–drug interactions.
- Preclinical and clinical study support: Provide a consolidated set of predictive models to support study design, hypothesis generation, and translational analyses.
Methodology:
Integration of predictive genetic models from diverse pharmacogenetic studies into a unified MySQL database to enable genome–drug interaction mining.
Topics
Details
- Tool Type:
- command-line tool
- Programming Languages:
- JavaScript, PHP, SQL
- Added:
- 1/14/2020
- Last Updated:
- 12/14/2020
Operations
Publications
Guo Y, Chen X. An integrative resource for investigating genetic model of drug response in cancer. Unknown Journal. 2019. doi:10.1101/555789.
DOI: 10.1101/555789
Links
Repository
https://github.com/ModelLAB-ZJU/iGMDR