iS-CellR

iS-CellR performs comprehensive analysis of single-cell RNA sequencing (scRNA-seq) data to support exploration of single-cell transcriptomes.


Key Features:

  • scRNA-seq analysis: Provides analysis functionality specific to single-cell RNA sequencing (scRNA-seq) datasets.
  • R Shiny implementation: Implemented as an R Shiny application.
  • Docker deployment: Packaged for deployment using Docker.

Scientific Applications:

  • scRNA-seq data analysis: Enables comprehensive analysis of single-cell RNA sequencing datasets.
  • Exploratory transcriptomics: Supports exploration of single-cell transcriptomic data.

Methodology:

Implemented as an R Shiny application and deployable via Docker.

Topics

Details

License:
GPL-3.0
Maturity:
Mature
Cost:
Free of charge
Tool Type:
desktop application
Operating Systems:
Linux, Windows, Mac
Programming Languages:
R
Added:
7/6/2019
Last Updated:
11/24/2024

Operations

Publications

Patel MV. iS-CellR: a user-friendly tool for analyzing and visualizing single-cell RNA sequencing data. Bioinformatics. 2018;34(24):4305-4306. doi:10.1093/bioinformatics/bty517. PMID:29982379. PMCID:PMC6289135.

Documentation

Downloads

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