iS-CellR
iS-CellR performs comprehensive analysis of single-cell RNA sequencing (scRNA-seq) data to support exploration of single-cell transcriptomes.
Key Features:
- scRNA-seq analysis: Provides analysis functionality specific to single-cell RNA sequencing (scRNA-seq) datasets.
- R Shiny implementation: Implemented as an R Shiny application.
- Docker deployment: Packaged for deployment using Docker.
Scientific Applications:
- scRNA-seq data analysis: Enables comprehensive analysis of single-cell RNA sequencing datasets.
- Exploratory transcriptomics: Supports exploration of single-cell transcriptomic data.
Methodology:
Implemented as an R Shiny application and deployable via Docker.
Topics
Details
- License:
- GPL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- desktop application
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- R
- Added:
- 7/6/2019
- Last Updated:
- 11/24/2024
Operations
Publications
Patel MV. iS-CellR: a user-friendly tool for analyzing and visualizing single-cell RNA sequencing data. Bioinformatics. 2018;34(24):4305-4306. doi:10.1093/bioinformatics/bty517. PMID:29982379. PMCID:PMC6289135.
Documentation
Downloads
- Source codeVersion: 1.0https://github.com/immcore/iS-CellR/releases/tag/v1.0
- Source codeVersion: 1.1https://github.com/immcore/iS-CellR/releases/tag/v1.1
Links
Issue tracker
https://github.com/immcore/iS-CellR/issues