iBiodegPred

iBiodegPred predicts biodegradability and biological toxicity of chemical compounds to inform environmental fate and risk assessment.


Key Features:

  • Machine Learning Integration: Leverages machine learning algorithms trained on experimental datasets to predict biodegradability and biological toxicity for diverse compounds, including xenobiotic molecules.
  • Integrated Risk Assessment: Combines biodegradability and toxicity predictions to provide a holistic assessment of environmental impact.
  • Application to Novel Molecules: Generates predictions for novel compounds, such as antiviral compounds, that lack prior biodegradation data.
  • Data-driven Models: Uses a robust dataset of experimental results from diverse chemical compounds to train predictive models.

Scientific Applications:

  • Environmental Fate Assessment: Informs fate predictions for industrial precursors and additives used in plastics, fibers, construction materials, and pharmaceuticals.
  • Toxicity Evaluation: Supports toxicological assessment by predicting biological toxicity of chemical substances.
  • Regulatory Support: Aids regulatory compliance and the development of safer, more sustainable chemicals through predictive screening.
  • Early Risk Screening: Anticipates potential environmental and health risks of novel and xenobiotic molecules without extensive experimental testing.

Methodology:

Implements machine learning algorithms trained on experimental datasets to build predictive models for biodegradability and biological toxicity and integrates those models to produce combined risk assessments.

Topics

Details

Tool Type:
api
Added:
1/18/2021
Last Updated:
2/1/2021

Operations

Publications

Garcia-Martin JA, Chavarría M, de Lorenzo V, Pazos F. Concomitant prediction of environmental fate and toxicity of chemical compounds. Biology Methods and Protocols. 2020;5(1). doi:10.1093/biomethods/bpaa025. PMID:33376807. PMCID:PMC7750720.

PMID: 33376807
PMCID: PMC7750720
Funding: - the Spanish Ministry of Economy and Competitiveness with European Regional Development Fund: SAF2016-78041-C2-2-R - the SETH: RTI2018-095584-B-C42, MINECO/FEDER - SyCoLiM: ERA-COBIOTECH 2018—PCI2019-111859-2 - Projects of the Spanish Ministry of Science and Innovation, the MADONNA: H2020-FET-OPEN-RIA-2017-1-766975 - BioRoboost: H2020-NMBP-BIO-CSA-2018-820699 - SynBio4Flav: H2020-NMBP-TR-IND/H2020-NMBP-BIO-2018-814650 - MIX-UP: MIX-UP H2020-BIO-CN-2019-870294 - Contracts of the European Union, as well as the InGEMICS-CM: Project of the Comunidad de Madrid—European Structural and Investment Funds (FSE, FECER), S2017/BMD-3691