ICC

ICC (Indel and Carryforward Correction) is a software pipeline to analyze 454 pyrosequencing data, including read quality filtering and alignment, indel and carryforward error correction, single nucleotide variant calling, and calculation of nucleotide variant and hyplotype frequencies.

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Topics

DNA Sequencing

Details

Tool Type:: command-line tool
Operating Systems:: Linux, Windows, Mac
Programming Languages:: Perl
Added:: 12/18/2017
Last Updated:: 12/10/2018

Operations

Variant calling
Generation
Filtering
Calculation
Alignment

Documentation

General

https://indra.mullins.microbiol.washington.edu/ICC/

Links

Software catalogue

http://www.mybiosoftware.com/icc-1-1-insertion-deletion-and-carry-forward-error-correction-for-next-generation-sequencing.html

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