Icolos
Icolos orchestrates structure-based computational workflows for drug design and computational chemistry applications.
Key Features:
- Automation of structure-based workflows: Automates complex structure-based workflows including virtual screening campaigns and docking setup and execution.
- Integration with deep learning molecular generators: Interfaces with REINVENT to support de novo molecular generation within workflows.
- Molecular docking workflow management: Manages molecular docking experiments to evaluate small molecule interactions with target proteins.
- Implementation: Implemented in Python.
Scientific Applications:
- Molecular docking experiments: Executes and manages docking workflows to study ligand–protein interactions.
- Virtual screening campaigns: Automates large-scale virtual screening to identify potential lead compounds from chemical libraries.
- De novo drug design: Integrates generative deep learning (REINVENT) into design–evaluate cycles for novel molecule generation.
Methodology:
Icolos abstracts execution logic from its implementation and is implemented in Python.
Topics
Details
- License:
- Apache-2.0
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Programming Languages:
- Python
- Added:
- 11/7/2022
- Last Updated:
- 11/24/2024
Operations
Publications
Moore JH, Bauer MR, Guo J, Patronov A, Engkvist O, Margreitter C. Icolos: a workflow manager for structure-based post-processing of <i>de novo</i> generated small molecules. Bioinformatics. 2022;38(21):4951-4952. doi:10.1093/bioinformatics/btac614. PMID:36073898.
PMID: 36073898
Documentation
Training material
https://github.com/MolecularAI/IcolosCommunity