Icolos

Icolos orchestrates structure-based computational workflows for drug design and computational chemistry applications.


Key Features:

  • Automation of structure-based workflows: Automates complex structure-based workflows including virtual screening campaigns and docking setup and execution.
  • Integration with deep learning molecular generators: Interfaces with REINVENT to support de novo molecular generation within workflows.
  • Molecular docking workflow management: Manages molecular docking experiments to evaluate small molecule interactions with target proteins.
  • Implementation: Implemented in Python.

Scientific Applications:

  • Molecular docking experiments: Executes and manages docking workflows to study ligand–protein interactions.
  • Virtual screening campaigns: Automates large-scale virtual screening to identify potential lead compounds from chemical libraries.
  • De novo drug design: Integrates generative deep learning (REINVENT) into design–evaluate cycles for novel molecule generation.

Methodology:

Icolos abstracts execution logic from its implementation and is implemented in Python.

Topics

Details

License:
Apache-2.0
Cost:
Free of charge
Tool Type:
command-line tool
Programming Languages:
Python
Added:
11/7/2022
Last Updated:
11/24/2024

Operations

Publications

Moore JH, Bauer MR, Guo J, Patronov A, Engkvist O, Margreitter C. Icolos: a workflow manager for structure-based post-processing of <i>de novo</i> generated small molecules. Bioinformatics. 2022;38(21):4951-4952. doi:10.1093/bioinformatics/btac614. PMID:36073898.

Documentation