IDBA

A short read assembler based on iterative De Bruijn graph. It is developed under 64-bit Linux, but should be suitable for all unix-like system.
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Topics

Sequence assembly

Details

License:
Unlicense
Maturity:
Mature
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Linux
Added:
1/13/2017
Last Updated:
11/24/2024

Operations

Data Inputs & Outputs

Sequence assembly

Outputs

    Publications

    Peng Y, Leung HCM, Yiu SM, Chin FYL. IDBA – A Practical Iterative de Bruijn Graph De Novo Assembler. Lecture Notes in Computer Science. 2010. doi:10.1007/978-3-642-12683-3_28.

    Documentation

    General
    https://i.cs.hku.hk/~alse/hkubrg/projects/idba/

    Downloads

    Links

    Repository
    https://github.com/loneknightpy/idba
    Issue tracker
    https://github.com/loneknightpy/idba/issues
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