Idiographica

Idiographica generates customizable idiograms for human, mouse, and rat genomes to visualize genome-wide mapping and annotation data.


Key Features:

  • Species support: Generates idiograms for human, mouse, and rat genomes.
  • Input data: Accepts genome-wide mapping or annotation data for incorporation into idiograms.
  • Custom annotation: Incorporates user-provided genomic annotations into idiogram graphics.
  • Rendering quality: Produces high-quality, customizable graphical idiograms.
  • Versatile outputs: Idiograms can be used to summarize genome-wide analyses and incorporated into web pages, conference posters, and presentations.

Scientific Applications:

  • Genome-wide summary: Visual summarization of genome-wide analyses for human, mouse, and rat.
  • Annotation mapping visualization: Display of mapping and annotation data on chromosomal idiograms.
  • Figure preparation: Creation of publication- and presentation-ready chromosomal figures for dissemination of genomic results.

Methodology:

Processes user-provided genome-wide mapping or annotation data to render detailed, customizable idiograms.

Topics

Details

Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Added:
5/2/2017
Last Updated:
11/25/2024

Operations

Publications

Kin T, Ono Y. Idiographica: a general-purpose web application to build idiograms on-demand for human, mouse and rat. Bioinformatics. 2007;23(21):2945-2946. doi:10.1093/bioinformatics/btm455. PMID:17893084.

Documentation