Idiographica
Idiographica generates customizable idiograms for human, mouse, and rat genomes to visualize genome-wide mapping and annotation data.
Key Features:
- Species support: Generates idiograms for human, mouse, and rat genomes.
- Input data: Accepts genome-wide mapping or annotation data for incorporation into idiograms.
- Custom annotation: Incorporates user-provided genomic annotations into idiogram graphics.
- Rendering quality: Produces high-quality, customizable graphical idiograms.
- Versatile outputs: Idiograms can be used to summarize genome-wide analyses and incorporated into web pages, conference posters, and presentations.
Scientific Applications:
- Genome-wide summary: Visual summarization of genome-wide analyses for human, mouse, and rat.
- Annotation mapping visualization: Display of mapping and annotation data on chromosomal idiograms.
- Figure preparation: Creation of publication- and presentation-ready chromosomal figures for dissemination of genomic results.
Methodology:
Processes user-provided genome-wide mapping or annotation data to render detailed, customizable idiograms.
Topics
Details
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 5/2/2017
- Last Updated:
- 11/25/2024
Operations
Publications
Kin T, Ono Y. Idiographica: a general-purpose web application to build idiograms on-demand for human, mouse and rat. Bioinformatics. 2007;23(21):2945-2946. doi:10.1093/bioinformatics/btm455. PMID:17893084.
PMID: 17893084