IdMappingAnalysis

IdMappingAnalysis evaluates identifier mapping performance for high-throughput genomic and molecular biology data to support accurate integration across biological databases.


Key Features:

  • Open-Source Development: Implemented as a Bioconductor component under an open-source development model.
  • Interoperability: Integrated within the Bioconductor ecosystem of 934 interoperable packages to enable compatibility with other genomics tools and datasets.
  • Statistical Programming Language R: Built on the R programming language for data analysis, visualization, and statistical modeling.
  • Community-Driven Contributions: Development is supported by contributions from a diverse scientific community.
  • Quality Assurance: Subject to formal initial review and continuous automated testing within the Bioconductor infrastructure.

Scientific Applications:

  • Data Integration: Ensures consistent and accurate mapping of identifiers to facilitate merging of datasets from multiple biological databases.
  • Performance Evaluation: Assesses the effectiveness of different mapping strategies to optimize data retrieval and downstream analyses.
  • Interdisciplinary Research: Supports collaborative efforts across genomics and molecular biology by enabling consistent identifier mappings.

Methodology:

Statistical analysis techniques implemented in R are used to evaluate identifier mapping performance.

Topics

Collections

Details

License:
GPL-2.0
Tool Type:
command-line tool, library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
R
Added:
1/17/2017
Last Updated:
11/25/2024

Operations

Publications

Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Orchestrating high-throughput genomic analysis with Bioconductor. Nature Methods. 2015;12(2):115-121. doi:10.1038/nmeth.3252. PMID:25633503. PMCID:PMC4509590.

Documentation

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