IdMappingRetrieval

IdMappingRetrieval retrieves identifier mapping data to evaluate and validate cross-references among biological databases for high-throughput genomic and molecular biology analyses.


Key Features:

  • Data Retrieval Capabilities: Extracts the data required to assess identifier mapping accuracy and efficiency across biological databases.
  • Integration with Bioconductor: Integrates with Bioconductor, an R-based platform for high-throughput genomic data analysis.
  • Interoperability: Interoperates with other Bioconductor packages (934 packages) to integrate into complex bioinformatics workflows.
  • Statistical and Bioinformatic Applications: Leverages R's statistical programming capabilities for bioinformatic analyses on genomic datasets.
  • Quality Assurance: Relies on Bioconductor's formal package review process and continuous automated testing frameworks for software quality.

Scientific Applications:

  • Genomic Research: Supports accurate mapping of genomic identifiers for comparative genomics and gene expression analyses.
  • Molecular Biology Studies: Facilitates validation of molecular identifiers across datasets in proteomics, transcriptomics, and metabolomics.

Methodology:

Performs systematic data retrieval using R statistical frameworks and Bioconductor package integration to handle large-scale genomic datasets.

Topics

Collections

Details

License:
GPL-2.0
Tool Type:
command-line tool, library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
R
Added:
1/17/2017
Last Updated:
11/25/2024

Operations

Data Inputs & Outputs

Publications

Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Orchestrating high-throughput genomic analysis with Bioconductor. Nature Methods. 2015;12(2):115-121. doi:10.1038/nmeth.3252. PMID:25633503. PMCID:PMC4509590.

Documentation

Downloads