IdMappingRetrieval
IdMappingRetrieval retrieves identifier mapping data to evaluate and validate cross-references among biological databases for high-throughput genomic and molecular biology analyses.
Key Features:
- Data Retrieval Capabilities: Extracts the data required to assess identifier mapping accuracy and efficiency across biological databases.
- Integration with Bioconductor: Integrates with Bioconductor, an R-based platform for high-throughput genomic data analysis.
- Interoperability: Interoperates with other Bioconductor packages (934 packages) to integrate into complex bioinformatics workflows.
- Statistical and Bioinformatic Applications: Leverages R's statistical programming capabilities for bioinformatic analyses on genomic datasets.
- Quality Assurance: Relies on Bioconductor's formal package review process and continuous automated testing frameworks for software quality.
Scientific Applications:
- Genomic Research: Supports accurate mapping of genomic identifiers for comparative genomics and gene expression analyses.
- Molecular Biology Studies: Facilitates validation of molecular identifiers across datasets in proteomics, transcriptomics, and metabolomics.
Methodology:
Performs systematic data retrieval using R statistical frameworks and Bioconductor package integration to handle large-scale genomic datasets.
Topics
Collections
Details
- License:
- GPL-2.0
- Tool Type:
- command-line tool, library
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- R
- Added:
- 1/17/2017
- Last Updated:
- 11/25/2024
Operations
Data Inputs & Outputs
Data retrieval
Publications
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Orchestrating high-throughput genomic analysis with Bioconductor. Nature Methods. 2015;12(2):115-121. doi:10.1038/nmeth.3252. PMID:25633503. PMCID:PMC4509590.