iLncRNAdis-FB

iLncRNAdis-FB predicts associations between long non-coding RNAs (lncRNAs) and diseases by integrating multiple biological information sources into structured feature blocks for computational inference.


Key Features:

  • Integration of Biological Information: Integrates multiple biological data sources into structured feature blocks that encapsulate relevant biological features.
  • Convolutional Neural Network (CNN) Architecture: Constructs lncRNA and disease similarity matrices to generate three-dimensional feature blocks that serve as input to a convolutional neural network.
  • Noise Reduction: Applies a supervised fusion approach to reduce noisy and irrelevant information, retaining pertinent features for prediction.
  • Performance Superiority: Experimental results indicate higher predictive performance compared with other state-of-the-art lncRNA-disease association predictors.

Scientific Applications:

  • Disease Mechanism Exploration: Identifying lncRNA-disease links to support investigation of molecular underpinnings of diseases.
  • Drug Discovery: Prioritizing lncRNAs associated with diseases as candidates for molecular targeting in drug discovery.

Methodology:

Constructs lncRNA and disease similarity matrices, generates three-dimensional feature blocks from these matrices by fusing multiple biological information sources, and trains a supervised convolutional neural network on the feature blocks to predict lncRNA-disease associations.

Topics

Details

Tool Type:
api
Added:
1/18/2021
Last Updated:
11/24/2024

Operations

Publications

Wei H, Liao Q, Liu B. iLncRNAdis-FB: Identify lncRNA-Disease Associations by Fusing Biological Feature Blocks Through Deep Neural Network. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2021;18(5):1946-1957. doi:10.1109/tcbb.2020.2964221. PMID:31905146.

PMID: 31905146
Funding: - Beijing Natural Science Foundation: JQ19019 - National Natural Science Foundation of China: 61672184, 61732012, 61822306 - Fok Ying-Tung Education Foundation for Young Teachers in the Higher Education Institutions of China: 161063 - Scientific Research Foundation in Shenzhen: JCYJ20180306172156841, JCYJ20180306172207178, JCYJ20180507183608379