iLncRNAdis-FB
iLncRNAdis-FB predicts associations between long non-coding RNAs (lncRNAs) and diseases by integrating multiple biological information sources into structured feature blocks for computational inference.
Key Features:
- Integration of Biological Information: Integrates multiple biological data sources into structured feature blocks that encapsulate relevant biological features.
- Convolutional Neural Network (CNN) Architecture: Constructs lncRNA and disease similarity matrices to generate three-dimensional feature blocks that serve as input to a convolutional neural network.
- Noise Reduction: Applies a supervised fusion approach to reduce noisy and irrelevant information, retaining pertinent features for prediction.
- Performance Superiority: Experimental results indicate higher predictive performance compared with other state-of-the-art lncRNA-disease association predictors.
Scientific Applications:
- Disease Mechanism Exploration: Identifying lncRNA-disease links to support investigation of molecular underpinnings of diseases.
- Drug Discovery: Prioritizing lncRNAs associated with diseases as candidates for molecular targeting in drug discovery.
Methodology:
Constructs lncRNA and disease similarity matrices, generates three-dimensional feature blocks from these matrices by fusing multiple biological information sources, and trains a supervised convolutional neural network on the feature blocks to predict lncRNA-disease associations.
Topics
Details
- Tool Type:
- api
- Added:
- 1/18/2021
- Last Updated:
- 11/24/2024
Operations
Publications
Wei H, Liao Q, Liu B. iLncRNAdis-FB: Identify lncRNA-Disease Associations by Fusing Biological Feature Blocks Through Deep Neural Network. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2021;18(5):1946-1957. doi:10.1109/tcbb.2020.2964221. PMID:31905146.