ImagePy

ImagePy provides scalable analysis of biological images and enables integration of modern computational algorithms into bioimage-analysis workflows.


Key Features:

  • Scalability: Performs scalable analysis of biological images.
  • Extensibility: Implements an extensible architecture for adding algorithms and modules.
  • Interoperability: Enables interoperability to combine algorithms from the broader scientific ecosystem.
  • Decoupled data model: Separates the data model to facilitate integration of modern computer algorithms into analysis workflows.
  • Python integration: Leverages the Python ecosystem to incorporate cutting-edge computational algorithms.

Scientific Applications:

  • Biological image analysis: Analysis of biological images within bioimage-analysis workflows.
  • Image data exploration and interpretation: Detailed exploration and interpretation of image-derived data.

Methodology:

Implements an extensible architecture that decouples the data model and integrates modern computer algorithms via the Python ecosystem.

Topics

Details

License:
BSD-2-Clause
Tool Type:
library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
Python
Added:
6/1/2018
Last Updated:
11/25/2024

Operations

Publications

Wang A, Yan X, Wei Z. ImagePy: an open-source, Python-based and platform-independent software package for bioimage analysis. Bioinformatics. 2018;34(18):3238-3240. doi:10.1093/bioinformatics/bty313. PMID:29718132.

PMID: 29718132
Funding: - National Key Research and Development Program of China: 2016YFC1401500 - National Natural Science Foundation of China: 11602051, 41506109, 41676189, DUT16LK27 - China Postdoctoral Science and Foundation: 2016M591433

Documentation