ImagePy
ImagePy provides scalable analysis of biological images and enables integration of modern computational algorithms into bioimage-analysis workflows.
Key Features:
- Scalability: Performs scalable analysis of biological images.
- Extensibility: Implements an extensible architecture for adding algorithms and modules.
- Interoperability: Enables interoperability to combine algorithms from the broader scientific ecosystem.
- Decoupled data model: Separates the data model to facilitate integration of modern computer algorithms into analysis workflows.
- Python integration: Leverages the Python ecosystem to incorporate cutting-edge computational algorithms.
Scientific Applications:
- Biological image analysis: Analysis of biological images within bioimage-analysis workflows.
- Image data exploration and interpretation: Detailed exploration and interpretation of image-derived data.
Methodology:
Implements an extensible architecture that decouples the data model and integrates modern computer algorithms via the Python ecosystem.
Topics
Details
- License:
- BSD-2-Clause
- Tool Type:
- library
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- Python
- Added:
- 6/1/2018
- Last Updated:
- 11/25/2024
Operations
Publications
Wang A, Yan X, Wei Z. ImagePy: an open-source, Python-based and platform-independent software package for bioimage analysis. Bioinformatics. 2018;34(18):3238-3240. doi:10.1093/bioinformatics/bty313. PMID:29718132.
PMID: 29718132
Funding: - National Key Research and Development Program of China: 2016YFC1401500
- National Natural Science Foundation of China: 11602051, 41506109, 41676189, DUT16LK27
- China Postdoctoral Science and Foundation: 2016M591433