imedigan
imedigan provides access to pretrained generative models for medical image synthesis to support clinical decision support systems and medical imaging research.
Key Features:
- Pretrained Generative Models: A repository of 21 pretrained models based on nine distinct generative adversarial network (GAN) architectures trained on 11 datasets spanning mammography, endoscopy, x‑ray, and MRI.
- Modular Components: Modular components for execution, visualization, search and ranking, and contribution enable running models, visualizing synthetic outputs, finding and ranking models, and adding new models.
- Framework-agnostic Architecture: A framework-agnostic architecture that supports integration with different deep learning frameworks.
- Evaluation and Metrics Support: Support for extraction and analysis of Fréchet Inception Distance (FID) with consideration of image normalization and radiology-specific feature extractors.
- Scalability: Design intended to scale to additional models and datasets.
Scientific Applications:
- Community-wide Data Sharing: Enable sharing of restricted data via synthetic images to facilitate collaboration across the medical research community.
- Evaluation Metrics Analysis: Facilitate investigation of generative model evaluation metrics such as FID and assessment of variability due to image normalization and radiology-specific feature extractors.
- Clinical Task Improvement: Provide synthetic data to augment training sets for clinical downstream machine learning tasks.
Methodology:
Access and reuse pretrained GANs to generate synthetic medical images for data augmentation and domain adaptation, and compute Fréchet Inception Distance (FID) using different image normalization schemes and radiology-specific feature extractors.
Topics
Details
- License:
- MIT
- Cost:
- Free of charge
- Tool Type:
- library
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python
- Added:
- 8/11/2023
- Last Updated:
- 11/24/2024
Operations
Publications
Osuala R, Skorupko G, Lazrak N, Garrucho L, García E, Joshi S, Jouide S, Rutherford M, Prior F, Kushibar K, Díaz O, Lekadir K. medigan: a Python library of pretrained generative models for medical image synthesis. Journal of Medical Imaging. 2023;10(06). doi:10.1117/1.jmi.10.6.061403. PMID:36814939. PMCID:PMC9940031.