IMFLer
IMFLer performs interactive metabolic flux analysis and visualization to analyze flux distributions in genome-scale metabolic models.
Key Features:
- Interactive Metabolic Flux Analysis: Supports flux balance analysis (FBA) and flux variability analysis (FVA) for comprehensive metabolic studies.
- Escher Builder integration: Loads, displays, edits, and saves metabolic pathway maps via the Escher Builder.
- Standardized Data Format: Uses a standardized file format for genome-scale metabolic models to improve data interoperability.
- Flux Visualization: Visualizes flux distributions on metabolic pathway maps to support analysis of metabolic networks.
Scientific Applications:
- Systems Biology: Conduct detailed analyses of metabolic networks by visualizing flux distributions.
- Bioinformatics: Interpret complex data outputs from genome-scale metabolic models.
- Metabolic Engineering: Facilitate exploration of metabolic pathways and their interactions within an organism.
Methodology:
Performs flux balance analysis (FBA) and flux variability analysis (FVA) and uses the Escher Builder to load, display, edit, and save metabolic pathway maps using a standardized file format for genome-scale metabolic models.
Topics
Details
- License:
- MIT
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- JavaScript
- Added:
- 1/18/2022
- Last Updated:
- 1/18/2022
Operations
Publications
Petrovs R, Stalidzans E, Pentjuss A. IMFLer: A Web Application for Interactive Metabolic Flux Analysis and Visualization. Journal of Computational Biology. 2021;28(10):1021-1032. doi:10.1089/cmb.2021.0056. PMID:34424732.
PMID: 34424732
Downloads
Links
Repository
https://github.com/lv-csbg/IMFLer