IMMAN

IMMAN reconstructs Interolog Protein Networks (IPNs) by integrating multiple Protein-Protein Interaction Networks (PPINs) to identify conserved interactions for comparative and functional analyses.


Key Features:

  • Integration of Multiple PPINs: IMMAN combines PPIN datasets to unify protein interaction data across species.
  • Conservation Analysis: IMMAN retrieves IPNs with varying degrees of conservation to detect interactions preserved across species.
  • Protein Function Prediction: IMMAN leverages conserved network structure and interaction patterns to support protein function prediction.

Scientific Applications:

  • Comparative Genomics: IMMAN identifies conserved networks for comparing protein interactions across species.
  • Evolutionary Biology: IMMAN aids analysis of evolutionary relationships by detecting conserved interactions across taxa.
  • Model-to-Human Extrapolation: IMMAN supports extrapolating findings from model organisms to human biology by identifying preserved proteins and pathways.

Methodology:

IMMAN systematically integrates PPINs by overlaying networks from different sources, identifies conserved interactions, and reconstructs Interolog Protein Networks (IPNs) for downstream analyses such as functional prediction and evolutionary studies.

Topics

Collections

Details

License:
Artistic-2.0
Tool Type:
library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
R
Added:
7/10/2018
Last Updated:
7/20/2019

Operations

Publications

Ashtinai M, Nickchi P, Jahangiri-Tazehkand S, Safari A, Mirzaie M, Jafari M. IMMAN: an R/Bioconductor package for Interolog protein network reconstruction, Mapping and Mining ANalysis. Unknown Journal. 2016. doi:10.1101/069104.

Documentation

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Related Tools

biostrings
Relation: uses