ImmunoGlobe

ImmunoGlobe provides a manually curated intercellular immune interaction network that maps the human immune interactome to support systems-immunology analyses.


Key Features:

  • Manually Curated Network: The network was constructed from authoritative immunological sources, including Janeway's Immunobiology textbook.
  • Directed Graph: The resource represents a directed graph comprising 253 distinct immune system components interconnected by 1112 unique interactions.
  • Interaction Annotation: Each of the 1112 interactions is annotated with detailed functional and characteristic information.
  • Novel Insights: Network analysis enables identification of novel multi-step immune pathways, assessment of species-specific differences in immune processes, and prediction of cellular responses to stimuli.
  • Standardized Interaction Map: Provides a standardized map to translate high-resolution profiling data into mechanistic insights.

Scientific Applications:

  • Understanding Immune Mechanisms: Translates high-resolution profiling data into actionable mechanistic insights about immune interactions.
  • Predictive Modeling: Supports modeling of complex immune interactions to derive mechanistic hypotheses for modulating immune responses in health and disease.
  • Cross-Disciplinary Utility: Offers a network-analysis resource specifically tailored to immunology complementing existing approaches in proteomics and genomics.

Methodology:

Data were extracted from established immunological literature and manually curated to construct a directed network mapping 253 immune components and 1112 annotated interactions.

Topics

Details

Tool Type:
api, web application
Added:
1/18/2021
Last Updated:
2/4/2021

Operations

Publications

Atallah MB, Tandon V, Hiam KJ, Boyce H, Hori M, Atallah W, Spitzer MH, Engleman E, Mallick P. ImmunoGlobe: enabling systems immunology with a manually curated intercellular immune interaction network. BMC Bioinformatics. 2020;21(1). doi:10.1186/s12859-020-03702-3. PMID:32778050. PMCID:PMC7430879.

PMID: 32778050
PMCID: PMC7430879
Funding: - Defense Advanced Research Projects Agency: D17AC00006, HR00111890036, W911NF-14-1-0364 - National Institutes of Health: 1R01GM11709701, DP5OD023056, S10OD018040