IndiGenomes
IndiGenomes provides a compendium of 55,898,122 single allelic genetic variants derived from whole genome sequencing of 1,029 geographically diverse healthy Indian individuals to support population-scale genomic analyses and medical genetics.
Key Features:
- Extensive Variant Compendium: Contains 55,898,122 single allelic genetic variants identified from whole genome sequencing of 1,029 individuals.
- Variant-level Metrics: Reports allele frequency, allele count, and counts of heterozygous and homozygous individuals for each variant.
- Cohort Composition: Dataset comprises 1,029 healthy individuals sampled across geographically diverse regions of India.
- Systematic Annotation: Variants are annotated using publicly available population databases.
Scientific Applications:
- Genetic Diversity Studies: Enables analysis of population structure and identification of population-specific genetic markers within India.
- Medical Genetics and Personalized Medicine: Provides population-specific variant frequency data to inform clinical interpretation and personalized-risk assessments.
- Comparative Genomics: Supports comparative analyses between the Indian genomic landscape and other global populations.
Methodology:
Whole genome sequencing of 1,029 healthy Indian individuals was performed, variants were identified, and variants were annotated using existing population databases.
Topics
Details
- Tool Type:
- api
- Added:
- 1/18/2021
- Last Updated:
- 11/24/2024
Operations
Publications
Jain A, Bhoyar RC, Pandhare K, Mishra A, Sharma D, Imran M, Senthivel V, Divakar MK, Rophina M, Jolly B, Batra A, Sharma S, Siwach S, Jadhao AG, Palande NV, Jha GN, Ashrafi N, Mishra PK, A. K. V, Jain S, Dash D, Kumar NS, Vanlallawma A, Sarma RJ, Chhakchhuak L, Kalyanaraman S, Mahadevan R, Kandasamy S, B. M. P, Rajagopal RE, J. ER, P. ND, Bajaj A, Gupta V, Mathew S, Goswami S, Mangla M, Prakash S, Joshi K, Meyakumla, S. S, Gajjar D, Soraisham R, Yadav R, Devi YS, Gupta A, Mukerji M, Ramalingam S, B. K. B, Scaria V, Sivasubbu S. IndiGenomes: a comprehensive resource of genetic variants from over 1000 Indian genomes. Nucleic Acids Research. 2020. doi:10.1093/nar/gkaa923. PMID:33095885. PMCID:PMC7778947.