InStrain
InStrain is a tool for analysis of co-occurring genome populations from metagenomes that allows highly accurate genome comparisons, analysis of coverage, microdiversity, and linkage, and sensitive SNP detection with gene localization and synonymous non-synonymous identification
Topics
Details
- Added:
- 11/2/2023
- Last Updated:
- 11/7/2024
Operations
Data Inputs & Outputs
Genome comparison
Publications
Olm MR, Crits-Christoph A, Bouma-Gregson K, Firek BA, Morowitz MJ, Banfield JF. inStrain profiles population microdiversity from metagenomic data and sensitively detects shared microbial strains. Nature Biotechnology. 2021;39(6):727-736. doi:10.1038/s41587-020-00797-0. PMID:33462508. PMCID:PMC9223867.
Funding: - National Science Foundation: DGE 1106400, DGE1106400
- Alfred P. Sloan Foundation: APSF-2012-10-05
- Foundation for the National Institutes of Health: RAI092531A