IntAct

IntAct provides a curated database of molecular interactions for storage and analysis of protein–protein interactions.


Key Features:

  • Curated interaction repository: Manually curated protein–protein interaction records aggregated from literature curation and direct data depositions.
  • Curation tool: Supports annotation at IMEx- and MIMIx-levels to enable standardized documentation of molecular interactions.
  • Quality control: Applies rigorous quality control on curated interaction entries.
  • Collaborative curation: Accepts contributions from multiple curation teams.
  • MINT integration: Integrates manually curated data from MINT into the IntAct database at EMBL-EBI.
  • IMEx consortium participation: Participates in the IMEx (International Molecular Exchange) consortium to support data standardization and integration across databases.
  • Open-source: Distributed as an open-source molecular interaction database.

Scientific Applications:

  • Curation and aggregation: Generation of comprehensive, curated protein interaction datasets for bioinformatics research.
  • Data standardization: Standardization and integration of molecular interaction data across multiple databases via IMEx.
  • Network analysis: Support for analysis of interaction networks to study complex biological processes.

Methodology:

Data are acquired by literature curation and direct data depositions, annotated at IMEx- and MIMIx-levels, and manually curated data from MINT have been integrated into IntAct at EMBL-EBI.

Topics

Details

Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Added:
6/11/2015
Last Updated:
11/25/2024

Operations

Data Inputs & Outputs

Query and retrieval

Inputs

    Publications

    Orchard S, Ammari M, Aranda B, Breuza L, Briganti L, Broackes-Carter F, Campbell NH, Chavali G, Chen C, del-Toro N, Duesbury M, Dumousseau M, Galeota E, Hinz U, Iannuccelli M, Jagannathan S, Jimenez R, Khadake J, Lagreid A, Licata L, Lovering RC, Meldal B, Melidoni AN, Milagros M, Peluso D, Perfetto L, Porras P, Raghunath A, Ricard-Blum S, Roechert B, Stutz A, Tognolli M, van Roey K, Cesareni G, Hermjakob H. The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases. Nucleic Acids Research. 2013;42(D1):D358-D363. doi:10.1093/nar/gkt1115. PMID:24234451. PMCID:PMC3965093.

    Documentation