Integrated Collection Stem Cell Bank
Integrated Collection Stem Cell Bank aggregates and standardizes metadata for stem cell lines from multiple repositories to enable cross-referencing and retrieval of disease-associated cell lines for regenerative medicine research.
Key Features:
- Standardization through MIACARM Framework: Uses the MIACARM framework to standardize data items and terms across source databases to ensure consistency and interoperability.
- Extensive Database Coverage: Integrates metadata for over 16,000 stem cell lines sourced from four major repositories in Europe, Japan, and the United States.
- Automated Updates: Automatically incorporates new data entries via an automated update mechanism to maintain current coverage.
- Integrative Search Functionality: Provides integrative search capability enabling retrieval of stem cell lines associated with over 1,000 diseases, including numerous rare conditions.
Scientific Applications:
- Regenerative Medicine Research: Provides standardized cell line metadata to support selection and comparison in regenerative medicine studies.
- Disease Modeling: Facilitates selection of disease-associated stem cell lines for in vitro disease models.
- Drug Testing and Screening: Enables identification of appropriate cell lines for drug testing and screening experiments.
- Therapeutic Development: Supports preclinical therapeutic development by linking standardized cell line information to disease contexts.
- Rare Disease Research: Prioritizes access to cell lines associated with over 1,000 diseases, including rare conditions, to support research on underrepresented disorders.
Methodology:
Data from multiple stem cell repositories are integrated and harmonized using the MIACARM framework to standardize items and terms, with an automated update mechanism to continuously incorporate new entries.
Topics
Collections
Details
- Tool Type:
- web application
- Added:
- 1/20/2021
- Last Updated:
- 5/17/2021
Operations
Publications
Chen Y, Sakurai K, Maeda S, Masui T, Okano H, Dewender J, Seltmann S, Kurtz A, Masuya H, Nakamura Y, Sheldon M, Schneider J, Stacey GN, Panina Y, Fujibuchi W. Integrated Collection of Stem Cell Bank data, a data portal for standardized stem cell information. Unknown Journal. 2020. doi:10.1101/2020.08.26.263830.