interactiveDisplay
interactiveDisplay provides interactive visualization of Bioconductor objects using Shiny and R for exploration of high-throughput genomic and molecular biology data.
Key Features:
- Interactive Visualization: Utilizes Shiny-based methods to generate dynamic visualizations of Bioconductor objects.
- Integration with Bioconductor: Works with Bioconductor's suite of 934 interoperable packages developed in R.
- Interoperability: Compatible with a wide range of bioinformatics and statistical applications available in Bioconductor.
- Quality Assurance: Leverages Bioconductor's formal initial review process and continuous automated testing of packages.
Scientific Applications:
- Genomic Data Exploration: Enables interactive exploration of high-throughput genomic datasets to support interpretation of complex biological processes.
- Molecular Biology Analysis: Supports visualization of molecular biology data to aid hypothesis generation and experimental analysis.
- Interdisciplinary Research: Provides a platform for integrating bioinformatics and statistical analyses across scientific disciplines.
Methodology:
Implements Shiny-based methods in R to generate interactive visualizations of Bioconductor objects and leverages R's statistical programming capabilities.
Topics
Collections
Details
- License:
- Artistic-2.0
- Tool Type:
- command-line tool, library
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- R
- Added:
- 1/17/2017
- Last Updated:
- 11/25/2024
Operations
Publications
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Orchestrating high-throughput genomic analysis with Bioconductor. Nature Methods. 2015;12(2):115-121. doi:10.1038/nmeth.3252. PMID:25633503. PMCID:PMC4509590.