interactiveDisplayBase

interactiveDisplayBase provides interactive visualization methods for BioConductor objects to support exploration and interpretation of high-throughput genomics and molecular biology data.


Key Features:

  • Interactive Visualization: Provides methods to generate interactive displays for BioConductor objects and high-throughput genomics data.
  • Integration with BioConductor: Operates within the BioConductor ecosystem and integrates with BioConductor objects and the project's interoperable packages (934 packages).
  • Quality Assurance: Package is subject to BioConductor formal initial review and continuous automated testing.

Scientific Applications:

  • Genomic data exploration: Enables dynamic exploration of high-throughput genomics datasets to assist identification of patterns and anomalies.
  • Molecular biology data interpretation: Facilitates analysis and visualization of molecular biology datasets represented as BioConductor objects.
  • Interdisciplinary genomic studies: Supports integration of visualization outputs into interdisciplinary research workflows in genomics and related fields.

Methodology:

Implements interactive displays using R and Shiny, operates on BioConductor objects within the BioConductor framework, and follows BioConductor's formal review process and continuous automated testing.

Topics

Collections

Details

License:
Artistic-2.0
Tool Type:
command-line tool, library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
R
Added:
1/17/2017
Last Updated:
11/25/2024

Operations

Publications

Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Orchestrating high-throughput genomic analysis with Bioconductor. Nature Methods. 2015;12(2):115-121. doi:10.1038/nmeth.3252. PMID:25633503. PMCID:PMC4509590.

Documentation

Downloads