iSEEtree

iSEEtree extends the interactive graphics capabilities of iSEE to the TreeSummarizedExperiment data container, enabling visual analysis and exploration of hierarchical multi-table data without extensive R programming knowledge.

Key Features:

• Interactive Panel Designs: Provides interactive panel designs to explore hierarchical datasets such as microbiome and cell line data.
• TreeSummarizedExperiment Integration: Expands interactive graphics capabilities to hierarchical structures through the TreeSummarizedExperiment data container.
• Multi-table Data Exploration: Enables interactive exploration of several aspects of hierarchical multi-table data.

Scientific Applications:

• Microbiome Analysis: Supports exploration of microbial communities classified at various taxonomic levels using phylogenetic trees.
• Hierarchical Data Exploration: Facilitates analysis of complex interconnected systems represented by hierarchical data structures across multiple research fields.

Methodology:

iSEEtree was implemented as an R package available through Bioconductor, building upon the TreeSummarizedExperiment data container and the iSEE interactive graphics framework.