ITDetect

ITDetect detects internal tandem duplications (ITDs) of the FMS-like tyrosine kinase 1 gene (FLT3) from next-generation sequencing (NGS) data to enable molecular characterization relevant to acute myeloid leukemia (AML).


Key Features:

  • High Sensitivity and Precision: Provides enhanced sensitivity and precision for FLT3-ITD detection compared with conventional PCR and fragment analysis.
  • Comprehensive Data Utilization: Processes multiple NGS data types including exome sequencing and targeted panel sequencing.
  • Detailed Information Output: Reports precise characterization of duplication events for FLT3-ITDs.
  • Clinical Relevance: Improves detection accuracy and supplies comprehensive FLT3-ITD data to inform patient stratification and treatment decisions in AML.

Scientific Applications:

  • Research: Generates detailed FLT3-ITD profiles to support studies of mutation patterns and their implications in AML.
  • Clinical Diagnostics: Supports clinical diagnostic workflows by providing outputs with high concordance to experimental ITD detection methods, informing treatment strategies.

Methodology:

Analyzes NGS data using advanced algorithms for FLT3-ITD identification and has been validated against NGS-based and traditional experimental ITD detection methods.

Topics

Details

License:
MIT
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Mac, Linux, Windows
Added:
3/21/2023
Last Updated:
11/24/2024

Operations

Publications

Lee S, Sun C, Jang H, Kim D, Yoon S, Koh Y, Na SC, Cho SI, Kim MJ, Seong M, Byun JM, Yun H. ITDetect: a method to detect internal tandem duplication of FMS-like tyrosine kinase (FLT3) from next-generation sequencing data with high sensitivity and clinical application. BMC Bioinformatics. 2023;24(1). doi:10.1186/s12859-023-05173-8. PMID:36823555. PMCID:PMC9951415.

PMID: 36823555
PMCID: PMC9951415
Funding: - Ministry of Health & Welfare, Republic of Korea: HI14C1277