ITDetect
ITDetect detects internal tandem duplications (ITDs) of the FMS-like tyrosine kinase 1 gene (FLT3) from next-generation sequencing (NGS) data to enable molecular characterization relevant to acute myeloid leukemia (AML).
Key Features:
- High Sensitivity and Precision: Provides enhanced sensitivity and precision for FLT3-ITD detection compared with conventional PCR and fragment analysis.
- Comprehensive Data Utilization: Processes multiple NGS data types including exome sequencing and targeted panel sequencing.
- Detailed Information Output: Reports precise characterization of duplication events for FLT3-ITDs.
- Clinical Relevance: Improves detection accuracy and supplies comprehensive FLT3-ITD data to inform patient stratification and treatment decisions in AML.
Scientific Applications:
- Research: Generates detailed FLT3-ITD profiles to support studies of mutation patterns and their implications in AML.
- Clinical Diagnostics: Supports clinical diagnostic workflows by providing outputs with high concordance to experimental ITD detection methods, informing treatment strategies.
Methodology:
Analyzes NGS data using advanced algorithms for FLT3-ITD identification and has been validated against NGS-based and traditional experimental ITD detection methods.
Topics
Details
- License:
- MIT
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Mac, Linux, Windows
- Added:
- 3/21/2023
- Last Updated:
- 11/24/2024
Operations
Publications
Lee S, Sun C, Jang H, Kim D, Yoon S, Koh Y, Na SC, Cho SI, Kim MJ, Seong M, Byun JM, Yun H. ITDetect: a method to detect internal tandem duplication of FMS-like tyrosine kinase (FLT3) from next-generation sequencing data with high sensitivity and clinical application. BMC Bioinformatics. 2023;24(1). doi:10.1186/s12859-023-05173-8. PMID:36823555. PMCID:PMC9951415.