iTritiKBdb
iTritiKBdb catalogs and analyzes protein–protein interactions between wheat (Triticum species) and the Karnal bunt pathogen Tilletia indica to elucidate molecular mechanisms of infection and host immune responses.
Key Features:
- Comprehensive Database: Provides functional annotations for host and pathogen proteins, including subcellular localization, protein domains, KEGG pathways, and Gene Ontology (GO) terms.
- Interactomics Tool: Predicts and represents protein–protein interaction networks between wheat and T. indica and supports enriched comparison of predicted interactions.
- Functional Annotations of Regulatory and Virulence Factors: Includes annotated transcription factors from wheat and candidate effectors from T. indica linked to interaction data.
Scientific Applications:
- Infection mechanism elucidation: Support identification of host and pathogen proteins and interactions involved in Karnal bunt infection by Tilletia indica.
- Host–pathogen interactome mapping: Enable mapping and comparative analysis of wheat–T. indica protein–protein interaction networks.
- Crop resistance and management research: Aid selection of candidate transcription factors and pathogen effectors for studies on disease resistance and management strategies.
Methodology:
Integrates bioinformatics tools to predict and analyze protein–protein interactions between wheat and Tilletia indica and constructs enriched interaction networks using existing molecular interaction knowledge.
Topics
Details
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Added:
- 10/2/2022
- Last Updated:
- 11/24/2024
Operations
Publications
Duhan N, Kataria R, Kaundal R. TritiKBdb: A Functional Annotation Resource for Deciphering the Complete Interaction Networks in Wheat-Karnal Bunt Pathosystem. International Journal of Molecular Sciences. 2022;23(13):7455. doi:10.3390/ijms23137455. PMID:35806459. PMCID:PMC9267065.