iTritiKBdb

iTritiKBdb catalogs and analyzes protein–protein interactions between wheat (Triticum species) and the Karnal bunt pathogen Tilletia indica to elucidate molecular mechanisms of infection and host immune responses.


Key Features:

  • Comprehensive Database: Provides functional annotations for host and pathogen proteins, including subcellular localization, protein domains, KEGG pathways, and Gene Ontology (GO) terms.
  • Interactomics Tool: Predicts and represents protein–protein interaction networks between wheat and T. indica and supports enriched comparison of predicted interactions.
  • Functional Annotations of Regulatory and Virulence Factors: Includes annotated transcription factors from wheat and candidate effectors from T. indica linked to interaction data.

Scientific Applications:

  • Infection mechanism elucidation: Support identification of host and pathogen proteins and interactions involved in Karnal bunt infection by Tilletia indica.
  • Host–pathogen interactome mapping: Enable mapping and comparative analysis of wheat–T. indica protein–protein interaction networks.
  • Crop resistance and management research: Aid selection of candidate transcription factors and pathogen effectors for studies on disease resistance and management strategies.

Methodology:

Integrates bioinformatics tools to predict and analyze protein–protein interactions between wheat and Tilletia indica and constructs enriched interaction networks using existing molecular interaction knowledge.

Topics

Details

Cost:
Free of charge
Tool Type:
web application
Operating Systems:
Mac, Linux, Windows
Added:
10/2/2022
Last Updated:
11/24/2024

Operations

Publications

Duhan N, Kataria R, Kaundal R. TritiKBdb: A Functional Annotation Resource for Deciphering the Complete Interaction Networks in Wheat-Karnal Bunt Pathosystem. International Journal of Molecular Sciences. 2022;23(13):7455. doi:10.3390/ijms23137455. PMID:35806459. PMCID:PMC9267065.

PMID: 35806459
PMCID: PMC9267065
Funding: - Utah Agricultural Experiment Station (UAES), Utah State University: # A48025