iVirus
iVirus integrates CyVerse and KBase resources to analyze double-stranded DNA (dsDNA) viruses and support ecological analyses of viral impacts on microbial ecosystems.
Key Features:
- Integrated Analytical Platforms: Core iVirus applications have been integrated into KBase to enable comprehensive analyses of dsDNA viruses across ecosystems.
- Expanded Software Tools: At CyVerse, the iVirus suite includes upgrades to 20 existing apps and newly added capabilities for viral sequence analysis.
- Enhanced Data Aggregation: The platform aggregates nearly 20-fold more sequence reads from diverse environments, increasing data breadth for viral ecology studies.
Scientific Applications:
- Ecological impact assessment: Supports studies of how dsDNA viruses influence microbial community structure and ecosystem processes.
- Cross-ecosystem viral surveys: Enables analysis of aggregated viral sequence data from diverse environments to compare viral community composition and abundance.
- KBase-enabled analyses: Leverages KBase integration to provide additional analytical capabilities for tailored viral ecology investigations.
Methodology:
Aggregation and analysis of large-scale environmental sequence reads using an extensive suite of bioinformatics tools to analyze viral communities, assess ecological roles, and explore interactions with microbial hosts.
Topics
Details
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Added:
- 3/21/2023
- Last Updated:
- 11/24/2024
Operations
Publications
Bolduc B, Zablocki O, Guo J, Zayed AA, Vik D, Dehal P, Wood-Charlson EM, Arkin A, Merchant N, Pett-Ridge J, Roux S, Vaughn M, Sullivan MB. iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology. ISME Communications. 2021;1(1). doi:10.1038/s43705-021-00083-3. PMID:36765102. PMCID:PMC9723767.