JARVIS-STM

JARVIS-STM provides DFT-calculated, Tersoff–Hamann–generated computational scanning tunneling microscope (STM) images for exfoliable two-dimensional (2D) materials to support structural analysis and machine-learning classification of lattice features.


Key Features:

  • Extensive Database: Contains computational STM images for 716 distinct exfoliable 2D materials.
  • DFT/Tersoff–Hamann Image Generation: Uses density functional theory calculations with the Tersoff–Hamann approach to produce simulated STM images.
  • Bravais Lattice Analysis: Includes examples of five possible 2D Bravais lattice types along with their Fourier-transforms for structural characterization.
  • Experimental Agreement: Computational STM images exhibit qualitative agreement with experimental STM images.
  • Machine Learning Integration: Has been used to train convolutional neural networks to identify Bravais lattice structures from STM images, enabling high-throughput analysis.
  • NIST-JARVIS Integration: Developed as part of the NIST-JARVIS framework.

Scientific Applications:

  • Phase Identification: Identification of crystal phases in 2D materials via comparison of simulated and experimental STM images.
  • Defect Analysis: Analysis of point and extended defects in 2D materials using computational STM contrasts.
  • Lattice Distortion Examination: Examination of lattice distortions and symmetry via STM image patterns and Fourier analysis.
  • Autonomous Experiment Workflows: Support for high-throughput and autonomous experimental workflows through ML-enabled classification of STM data.

Methodology:

Density functional theory (DFT) calculations using the Tersoff–Hamann method to generate STM images; computation of Fourier-transforms for lattice analysis; training of convolutional neural networks on STM images for Bravais lattice classification.

Topics

Details

Tool Type:
command-line tool, web application
Programming Languages:
Python
Added:
3/19/2021
Last Updated:
4/5/2021

Operations

Publications

Choudhary K, Garrity KF, Camp C, Kalinin SV, Vasudevan R, Ziatdinov M, Tavazza F. Computational scanning tunneling microscope image database. Scientific Data. 2021;8(1). doi:10.1038/s41597-021-00824-y. PMID:33574307. PMCID:PMC7878481.

Links