JIB.tools

JIB.tools registers bioinformatics tools, software applications, databases, and workflow systems published in the Journal of Integrative Bioinformatics (JIB) to provide a curated, interoperable registry linked to bio.tools.


Key Features:

  • Automatic integration with the publication process: Tool entries are automatically added to JIB.tools upon article publication in the Journal of Integrative Bioinformatics (JIB).
  • Editable entries by first authors: First authors of publications can edit their JIB.tools entries to update metadata and descriptions.
  • Seamless transfer to bio.tools: Entries can be transferred from JIB.tools to bio.tools to enable aggregation in a larger repository.
  • Status metadata provision: JIB.tools records status information for each tool describing its current state.

Scientific Applications:

  • Cataloguing peer-reviewed bioinformatics resources: Provides a registry of tools published in JIB for discovery and reference by researchers.
  • Selection of software for research: Assists researchers in identifying published software applications, databases, and workflows suitable for specific analyses.
  • Integration into broader registries and workflows: Facilitates dissemination of JIB-published tools into larger repositories like bio.tools to support integrative bioinformatics.

Methodology:

Automated ingestion of tool metadata from the JIB publication workflow, registry curation embedded in that workflow, author-editable entries, and the ability to export entries to bio.tools.

Topics

Details

Tool Type:
web application
Added:
1/18/2021
Last Updated:
11/29/2022

Operations

Data Inputs & Outputs

Deposition

Inputs

    Outputs

    Publications

    Friedrichs M, Shoshi A, Chmura PJ, Ison J, Schwämmle V, Schreiber F, Hofestädt R, Sommer B. JIB.tools 2.0 – A Bioinformatics Registry for Journal Published Tools with Interoperability to bio.tools. Journal of Integrative Bioinformatics. 2019;16(4). doi:10.1515/jib-2019-0059. PMID:31913853. PMCID:PMC7074141.

    Links