joineRML

joineRML models the joint distribution of multivariate longitudinal measurements and time-to-event (survival) outcomes to quantify associations between correlated repeated biomarkers and event risk.


Key Features:

  • Multivariate Longitudinal Modeling: Implements a multivariate linear mixed-effects sub-model to analyze several correlated repeated measures over time.
  • Time-to-Event Analysis: Integrates a Cox proportional hazards regression model with time-varying covariates to relate longitudinal trajectories to event timing.
  • Association Structure: Models the link between longitudinal and survival components via a zero-mean multivariate latent Gaussian process.
  • Fitting Algorithm: Estimates model parameters using a Monte Carlo Expectation-Maximization (EM) algorithm.
  • Inference and Computational Efficiency: Provides approximate standard errors from the empirical profile information matrix, offers bootstrap-based estimation as an alternative, and employs computational strategies to improve fitting speed.

Scientific Applications:

  • Clinical Research: Supports analyses where multiple biomarkers are measured longitudinally alongside patient survival or event occurrence, exemplified by studies such as primary biliary cirrhosis.
  • Biostatistics: Enables development and evaluation of models that jointly handle complex multivariate longitudinal and time-to-event data structures.

Methodology:

Specifies a multivariate linear mixed-effects model for the longitudinal component and a Cox proportional hazards model with time-varying covariates for the event-time component; links components via a zero-mean multivariate latent Gaussian process; fits parameters with a Monte Carlo EM algorithm and obtains inference from the empirical profile information matrix with bootstrap as an alternative, alongside computational speed-enhancing techniques.

Topics

Details

License:
GPL-3.0
Tool Type:
library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
R
Added:
7/28/2018
Last Updated:
11/25/2024

Operations

Publications

Hickey GL, Philipson P, Jorgensen A, Kolamunnage-Dona R. joineRML: a joint model and software package for time-to-event and multivariate longitudinal outcomes. BMC Medical Research Methodology. 2018;18(1). doi:10.1186/s12874-018-0502-1. PMID:29879902. PMCID:PMC6047371.

PMID: 29879902
PMCID: PMC6047371
Funding: - Medical Research Council: MR/M013227/1

Documentation